Detailed information NTG0113928

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: Q426_RS09295
• Genome accession: NZ_CP006770
• Coordinates: 1971877..1972272 (+)
• Length: 131 a.a.
• NCBI ID: WP_014623622.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus CY
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1972436..1973296	1971877..1972272	flank	164

Gene organization within MGE regions

Location: 1971877..1973296

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q426_RS09295 (Q426_09960)	ssbA	1971877..1972272 (+)	396	WP_014623622.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14754.85 Da
• Isoelectric Point: 8.0250

>NTDB_id=113928 Q426_RS09295 WP_014623622.1 1971877..1972272(+) (ssbA) [Streptococcus equi subsp. zooepidemicus CY]
MYNKVILIGRLVAKPELNKTLTDKQVVRFTLAVNRRFKTTTGEREVDFINAVAWGGLAETLASYASKGSLLSLDGELRTR
KYDKAGQTHFVTEVLCHSFQLLESRAQRAIRENNAANDLIDLALEEENLPF

Nucleotide

• Length: 396 bp

>NTDB_id=113928 Q426_RS09295 WP_014623622.1 1971877..1972272(+) (ssbA) [Streptococcus equi subsp. zooepidemicus CY]
ATGTACAATAAAGTAATCTTGATAGGCCGTTTAGTGGCCAAGCCAGAATTAAACAAGACATTAACAGATAAGCAGGTCGT
TCGATTTACCTTAGCAGTTAATCGTCGGTTTAAGACGACGACTGGTGAGCGTGAGGTGGATTTTATCAATGCTGTTGCTT
GGGGAGGTTTGGCTGAAACCTTGGCTTCCTATGCTAGCAAGGGGAGTCTGCTGTCACTTGATGGCGAGCTTCGCACACGA
AAATATGACAAGGCAGGTCAGACTCATTTTGTGACAGAGGTTTTGTGTCATTCTTTTCAATTGCTGGAAAGTCGAGCGCA
ACGGGCCATACGTGAAAACAATGCTGCTAATGATTTGATTGATTTAGCCTTAGAGGAGGAAAATCTTCCCTTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-101)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	76.336	100	0.763
ssbB	Streptococcus sobrinus strain NIDR 6715-7	71.756	100	0.718
ssbB/cilA	Streptococcus pneumoniae TIGR4	70.992	100	0.71
ssbB/cilA	Streptococcus pneumoniae R6	70.229	100	0.702
ssbB/cilA	Streptococcus pneumoniae Rx1	70.229	100	0.702
ssbB/cilA	Streptococcus pneumoniae D39	70.229	100	0.702
ssbB/cilA	Streptococcus mitis SK321	70.229	100	0.702
ssbB/cilA	Streptococcus mitis NCTC 12261	69.466	100	0.695
ssbB	Lactococcus lactis subsp. cremoris KW2	59.821	85.496	0.511
ssbA	Bacillus subtilis subsp. subtilis str. 168	50.943	80.916	0.412
ssb	Latilactobacillus sakei subsp. sakei 23K	44.444	89.313	0.397