Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQM61_RS00860 Genome accession   NZ_LS483379
Coordinates   126368..126763 (+) Length   131 a.a.
NCBI ID   WP_003053955.1    Uniprot ID   A0AAE9R0G1
Organism   Streptococcus pyogenes strain NCTC10874     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 121368..131763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM61_RS00825 - 122234..122542 (+) 309 WP_032467031.1 hypothetical protein -
  DQM61_RS00830 (NCTC10874_00167) proC 122625..123395 (-) 771 WP_002992745.1 pyrroline-5-carboxylate reductase -
  DQM61_RS00835 (NCTC10874_00168) pepA 123443..124510 (-) 1068 WP_023610097.1 glutamyl aminopeptidase -
  DQM61_RS00845 (NCTC10874_00169) - 124975..125259 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  DQM61_RS00850 (NCTC10874_00170) - 125256..125573 (+) 318 WP_002992751.1 thioredoxin family protein -
  DQM61_RS00855 (NCTC10874_00171) ytpR 125591..126235 (+) 645 WP_002992754.1 YtpR family tRNA-binding protein -
  DQM61_RS00860 (NCTC10874_00172) ssbA 126368..126763 (+) 396 WP_003053955.1 single-stranded DNA-binding protein Machinery gene
  DQM61_RS00865 (NCTC10874_00173) - 127023..127664 (-) 642 WP_023610076.1 deoxynucleoside kinase -
  DQM61_RS00870 (NCTC10874_00174) dusB 127684..128661 (-) 978 WP_021775420.1 tRNA dihydrouridine synthase DusB -
  DQM61_RS00875 (NCTC10874_00175) hslO 128648..129520 (-) 873 WP_023610084.1 Hsp33 family molecular chaperone HslO -
  DQM61_RS00880 (NCTC10874_00176) nra 129646..131181 (-) 1536 WP_023610098.1 transcriptional regulator Nra -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14787.96 Da        Isoelectric Point: 8.0157

>NTDB_id=1139263 DQM61_RS00860 WP_003053955.1 126368..126763(+) (ssbA) [Streptococcus pyogenes strain NCTC10874]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1139263 DQM61_RS00860 WP_003053955.1 126368..126763(+) (ssbA) [Streptococcus pyogenes strain NCTC10874]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCCGATTTTATTTCAGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment