Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DQN92_RS16300 Genome accession   NZ_LS483377
Coordinates   3487266..3488525 (+) Length   419 a.a.
NCBI ID   WP_111687603.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain NCTC10258     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3482266..3493525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN92_RS16280 (NCTC10258_03228) pilR 3482474..3483847 (+) 1374 WP_100451078.1 sigma-54 dependent transcriptional regulator Regulator
  DQN92_RS16285 (NCTC10258_03229) pilB 3483973..3485706 (-) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DQN92_RS16290 (NCTC10258_03230) - 3485929..3486336 (-) 408 WP_111687601.1 pilin -
  DQN92_RS16295 (NCTC10258_03231) - 3486485..3486913 (-) 429 WP_111687602.1 pilin -
  DQN92_RS16300 (NCTC10258_03232) pilC 3487266..3488525 (+) 1260 WP_111687603.1 type II secretion system F family protein Machinery gene
  DQN92_RS16305 (NCTC10258_03233) - 3488533..3489396 (+) 864 WP_049429911.1 A24 family peptidase -
  DQN92_RS16310 (NCTC10258_03234) coaE 3489408..3490019 (+) 612 WP_111687604.1 dephospho-CoA kinase -
  DQN92_RS20860 - 3490212..3490349 (-) 138 WP_172459932.1 hypothetical protein -
  DQN92_RS16315 (NCTC10258_03236) - 3490803..3492170 (-) 1368 WP_043034309.1 HAMP domain-containing sensor histidine kinase -
  DQN92_RS16320 (NCTC10258_03237) - 3492133..3492810 (-) 678 WP_005410804.1 response regulator transcription factor -
  DQN92_RS16325 (NCTC10258_03238) - 3492819..3493289 (-) 471 WP_005410805.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45964.42 Da        Isoelectric Point: 10.1071

>NTDB_id=1139194 DQN92_RS16300 WP_111687603.1 3487266..3488525(+) (pilC) [Stenotrophomonas maltophilia strain NCTC10258]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKSKPLFGAAGSPIKPKD
IAFFSRQMATMMKSGVPIVSSLDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWL
MLLVAIGTAVALVMSYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1139194 DQN92_RS16300 WP_111687603.1 3487266..3488525(+) (pilC) [Stenotrophomonas maltophilia strain NCTC10258]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGCGCCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCC
AGGGCATCAACCCGGGCCAGGTCAAGCCCAAGTCGAAGCCGCTGTTCGGCGCTGCCGGCAGCCCGATCAAGCCGAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGTCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTCGACACCATCCGCACCGACATCGAGGGCGGCTCCTCGATGTACGAGG
CGATCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTGTTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAGAACATCGAAGCGCTGAAGGGCAAGATCAAGAAAGCGCTGTTCTACCC
GATCATGGTGGTGGTGGTCGCCATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTCCCGCAATTCGAGGACGTGTTCA
AGAGCTTTGGCGCCGAGCTGCCCGCCTTCACCCAGATGGTGGTGAATCTCTCGCGGTTCATGGTGTCGTGGTGGTGGCTG
ATGCTGCTGGTCGCGATCGGTACGGCGGTCGCTCTGGTCATGTCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGTTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGCGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGTGCTACGGGCAACACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTCTCGGTGGGTTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCTGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.556

94.511

0.525
  pilC Legionella pneumophila strain ERS1305867

51.88

95.227

0.494
  pilC Acinetobacter baylyi ADP1

50.86

97.136

0.494
  pilC Acinetobacter baumannii D1279779

49.631

97.136

0.482
  pilG Neisseria gonorrhoeae MS11

44.888

95.704

0.43
  pilG Neisseria meningitidis 44/76-A

44.638

95.704

0.427
  pilC Vibrio cholerae strain A1552

41.379

96.897

0.401
  pilC Vibrio campbellii strain DS40M4

41.147

95.704

0.394
  pilC Thermus thermophilus HB27

37.562

95.943

0.36

Multiple sequence alignment