Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DQN92_RS16280 Genome accession   NZ_LS483377
Coordinates   3482474..3483847 (+) Length   457 a.a.
NCBI ID   WP_100451078.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain NCTC10258     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3477474..3488847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN92_RS16265 (NCTC10258_03225) sucD 3478376..3479251 (-) 876 WP_005410793.1 succinate--CoA ligase subunit alpha -
  DQN92_RS16270 (NCTC10258_03226) sucC 3479273..3480442 (-) 1170 WP_111687599.1 ADP-forming succinate--CoA ligase subunit beta -
  DQN92_RS16275 (NCTC10258_03227) - 3480800..3482413 (+) 1614 WP_111687600.1 PAS domain-containing sensor histidine kinase -
  DQN92_RS16280 (NCTC10258_03228) pilR 3482474..3483847 (+) 1374 WP_100451078.1 sigma-54 dependent transcriptional regulator Regulator
  DQN92_RS16285 (NCTC10258_03229) pilB 3483973..3485706 (-) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DQN92_RS16290 (NCTC10258_03230) - 3485929..3486336 (-) 408 WP_111687601.1 pilin -
  DQN92_RS16295 (NCTC10258_03231) - 3486485..3486913 (-) 429 WP_111687602.1 pilin -
  DQN92_RS16300 (NCTC10258_03232) pilC 3487266..3488525 (+) 1260 WP_111687603.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49501.73 Da        Isoelectric Point: 6.4405

>NTDB_id=1139192 DQN92_RS16280 WP_100451078.1 3482474..3483847(+) (pilR) [Stenotrophomonas maltophilia strain NCTC10258]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNAERPAPGPNAEQGGRLLGHSQAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGDLMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRAPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1139192 DQN92_RS16280 WP_100451078.1 3482474..3483847(+) (pilR) [Stenotrophomonas maltophilia strain NCTC10258]
ATGAATGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAGGCACGTGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGATGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCATTCGGCAGCATGGATCTCGCTGTGGAGGCACTGAAGGCCGGTGCGTTCGATTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGACTGGTCAAGCACGCGCTGGAACTCAACAACGCCGAGCGCCCGGCACCGGGCCCCAACG
CCGAACAGGGCGGGCGCCTGCTGGGCCACTCGCAGGCCATGGATGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAGTCGGGCGTCGGCAAGGAGCTGGTTGCACGCACCATCCATGCCCAGGGCGCGCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGATCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AGGGCAGTTTCAGCGGCGCACACGCCGACAAGCCTGGCCTGTTCCAGGCTGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTGGCTGAACTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGGGCGATCCAGGAAAAGTCGGTGCGCGCGGTGGGCGCGGC
CAACGAGGAGCCGGTGGATGTCCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCACTGCGCGAACGCCGCCAGGACCTGCCCGAA
CTGGCCGCCGCCGTGCTGGCCCGCCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCCTCGGCGCTGGAAGC
ACTGGCGCAGTACGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGTGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGATGACCTGCGCCTGCCGCAGCACGCGCCGCGTGCACCCGGCAGTGCCGCGCCCGCCGAAGCCGTG
GCCGACCTGCAGCCGGGCAGCGCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCAGCGCCATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(414-454)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.436

99.344

0.63
  pilR Acinetobacter baumannii strain A118

48.164

100

0.488
  luxO Vibrio cholerae strain A1552

37.303

97.374

0.363

Multiple sequence alignment