Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQM56_RS09455 Genome accession   NZ_LS483368
Coordinates   1969858..1970253 (-) Length   131 a.a.
NCBI ID   WP_043053489.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6176     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1964858..1975253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM56_RS09435 (NCTC6176_01913) - 1965653..1966456 (-) 804 WP_111710882.1 ABC transporter ATP-binding protein -
  DQM56_RS09440 (NCTC6176_01914) - 1966465..1967349 (-) 885 WP_015898646.1 ABC transporter permease -
  DQM56_RS09445 (NCTC6176_01915) - 1967457..1968419 (-) 963 WP_111710883.1 ABC transporter substrate-binding protein -
  DQM56_RS09450 (NCTC6176_01916) - 1968437..1969411 (-) 975 WP_111710884.1 ABC transporter substrate-binding protein -
  DQM56_RS09455 (NCTC6176_01917) ssbA 1969858..1970253 (-) 396 WP_043053489.1 single-stranded DNA-binding protein Machinery gene
  DQM56_RS09465 (NCTC6176_01918) ytpR 1970835..1971461 (-) 627 WP_012516419.1 YtpR family tRNA-binding protein -
  DQM56_RS09470 (NCTC6176_01919) - 1971476..1971793 (-) 318 WP_012516420.1 thioredoxin family protein -
  DQM56_RS09475 (NCTC6176_01920) - 1971790..1972074 (-) 285 WP_021321209.1 DUF4651 domain-containing protein -
  DQM56_RS09480 (NCTC6176_01921) pepA 1972479..1973546 (+) 1068 WP_111710885.1 glutamyl aminopeptidase -
  DQM56_RS09485 (NCTC6176_01922) proC 1973630..1974403 (+) 774 WP_111690489.1 pyrroline-5-carboxylate reductase -
  DQM56_RS09490 (NCTC6176_01923) - 1974626..1975063 (-) 438 WP_111710886.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14769.91 Da        Isoelectric Point: 8.0250

>NTDB_id=1138925 DQM56_RS09455 WP_043053489.1 1969858..1970253(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
MYNKVILIGRLVAKPELTKTLTDKQVVRFTLAVNRRFKTTTGEREVDFINVVAWGGLAETLASYASKGSLLSLDGELRTR
KYDKAGQTHFVTEVLCHSFQLLESRAQRAIRENNAANDLIDLALEEENLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1138925 DQM56_RS09455 WP_043053489.1 1969858..1970253(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
ATGTACAATAAAGTAATCTTGATAGGCCGTTTAGTGGCCAAGCCAGAATTAACCAAGACATTAACGGATAAGCAGGTCGT
TCGATTTACCTTAGCAGTTAATCGTCGGTTTAAGACGACGACTGGTGAGCGTGAGGTTGATTTTATCAATGTTGTTGCTT
GGGGAGGTTTGGCTGAAACCTTGGCTTCCTATGCTAGCAAGGGGAGCTTGCTGTCACTTGATGGCGAGCTTCGCACACGA
AAATATGACAAGGCAGGTCAGACTCATTTTGTGACAGAGGTTTTGTGTCATTCTTTTCAATTGCTGGAAAGTCGAGCGCA
ACGGGCCATACGTGAAAACAATGCTGCTAATGATTTGATTGATTTAGCCTTAGAGGAGGAAAATCTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

44.444

89.313

0.397

Multiple sequence alignment