Detailed information NTG1138694

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: DQM55_RS10765
• Genome accession: NZ_LS483364
• Coordinates: 2161363..2161797 (-)
• Length: 144 a.a.
• NCBI ID: WP_172454771.1
• Uniprot ID: -
• Organism: Streptococcus sanguinis strain NCTC11086
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2156363..2166797

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM55_RS10730 (NCTC11086_02173)	-	2156385..2157023 (-)	639	WP_111676733.1	type II CAAX prenyl endopeptidase Rce1 family protein	-
DQM55_RS10735 (NCTC11086_02174)	-	2157141..2157890 (-)	750	WP_172454770.1	CPBP family intramembrane glutamic endopeptidase	-
DQM55_RS10740 (NCTC11086_02175)	-	2158033..2159226 (-)	1194	WP_111676737.1	acetate kinase	-
DQM55_RS10745 (NCTC11086_02176)	comYH	2159263..2160228 (-)	966	WP_111676739.1	class I SAM-dependent methyltransferase	Machinery gene
DQM55_RS10750 (NCTC11086_02177)	comGG	2160310..2160702 (-)	393	WP_002907445.1	competence type IV pilus minor pilin ComGG	-
DQM55_RS10755 (NCTC11086_02178)	comGF/cglF	2160683..2161120 (-)	438	WP_111676741.1	competence type IV pilus minor pilin ComGF	Machinery gene
DQM55_RS10760 (NCTC11086_02179)	comGE/cglE	2161104..2161397 (-)	294	WP_111676743.1	competence type IV pilus minor pilin ComGE	Machinery gene
DQM55_RS10765 (NCTC11086_02180)	comYD	2161363..2161797 (-)	435	WP_172454771.1	competence type IV pilus minor pilin ComGD	Machinery gene
DQM55_RS10770 (NCTC11086_02181)	comYC	2161757..2162074 (-)	318	WP_002896769.1	competence type IV pilus major pilin ComGC	Machinery gene
DQM55_RS10775 (NCTC11086_02182)	comYB	2162074..2163108 (-)	1035	WP_269459928.1	competence type IV pilus assembly protein ComGB	Machinery gene
DQM55_RS10780 (NCTC11086_02183)	comYA	2163038..2163979 (-)	942	WP_111676749.1	competence type IV pilus ATPase ComGA	Machinery gene
DQM55_RS10785 (NCTC11086_02184)	-	2164109..2164489 (-)	381	WP_002903497.1	DUF1033 family protein	-
DQM55_RS10795 (NCTC11086_02185)	-	2164866..2165972 (-)	1107	WP_172454772.1	glycosyl hydrolase family 8	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16421.96 Da
• Isoelectric Point: 9.7340

>NTDB_id=1138694 DQM55_RS10765 WP_172454771.1 2161363..2161797(-) (comYD) [Streptococcus sanguinis strain NCTC11086]
MENTVAKLKRLPIKAFTLLESLLVLFVVSFLLLVLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLVGHDKLSLKISGR
QISNGYQELDFPQTLQEHEQQVIKFDRAGGNSSLSKIIFQTEDRTVVYQLYMGNGKFKKTTASG

Nucleotide

• Length: 435 bp

>NTDB_id=1138694 DQM55_RS10765 WP_172454771.1 2161363..2161797(-) (comYD) [Streptococcus sanguinis strain NCTC11086]
ATGGAAAACACAGTGGCGAAACTCAAGCGGTTGCCAATTAAGGCTTTTACATTGCTGGAAAGTCTCTTAGTTCTTTTTGT
TGTTAGTTTTCTACTACTAGTATTATCTGGCTCGGTCAGGGCTGGCTTCAATCAGGTTCAAGAGCAACTCTTCTTTTTAG
AGTTTGAGAGGCTCTATCAGGAGACGCAGAGGCTGAGCTTAGTTGGGCATGATAAGCTTTCTCTCAAGATTTCAGGACGG
CAGATTTCCAACGGTTATCAAGAGCTGGATTTTCCACAAACTTTGCAGGAGCATGAGCAGCAGGTCATTAAGTTTGACCG
GGCTGGGGGAAATTCATCACTCAGCAAGATTATTTTTCAGACGGAGGACAGGACAGTTGTTTACCAGCTTTATATGGGCA
ATGGCAAGTTTAAAAAGACGACAGCTTCAGGCTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus gordonii str. Challis substr. CH1	59.574	97.917	0.583
comGD/cglD	Streptococcus mitis NCTC 12261	56.818	91.667	0.521
comGD/cglD	Streptococcus pneumoniae Rx1	57.48	88.194	0.507
comGD/cglD	Streptococcus pneumoniae D39	57.48	88.194	0.507
comGD/cglD	Streptococcus pneumoniae R6	57.48	88.194	0.507
comGD/cglD	Streptococcus mitis SK321	57.48	88.194	0.507
comGD/cglD	Streptococcus pneumoniae TIGR4	56.693	88.194	0.5
comYD	Streptococcus mutans UA140	48.837	89.583	0.437
comYD	Streptococcus mutans UA159	48.837	89.583	0.437