Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   DQM53_RS06605 Genome accession   NZ_LS483361
Coordinates   1302935..1303261 (-) Length   108 a.a.
NCBI ID   WP_111716789.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1297935..1308261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM53_RS06590 (NCTC6179_01362) - 1299190..1299885 (-) 696 WP_111716782.1 LPXTG cell wall anchor domain-containing protein -
  DQM53_RS06595 (NCTC6179_01363) - 1299891..1300196 (-) 306 WP_111716784.1 hypothetical protein -
  DQM53_RS06600 (NCTC6179_01364) - 1300564..1302909 (-) 2346 WP_111716786.1 C39 family peptidase -
  DQM53_RS06605 (NCTC6179_01365) ssbB 1302935..1303261 (-) 327 WP_111716789.1 single-stranded DNA-binding protein Machinery gene
  DQM53_RS06610 - 1303258..1303476 (-) 219 WP_037582094.1 helix-turn-helix transcriptional regulator -
  DQM53_RS06615 (NCTC6179_01367) - 1303580..1304269 (-) 690 WP_111716791.1 hypothetical protein -
  DQM53_RS06620 (NCTC6179_01368) - 1304263..1305342 (-) 1080 WP_111716793.1 replication initiator protein A -
  DQM53_RS11230 (NCTC6179_01369) - 1305345..1305506 (-) 162 WP_000198163.1 hypothetical protein -
  DQM53_RS06625 (NCTC6179_01370) - 1305644..1306168 (+) 525 WP_111716795.1 hypothetical protein -
  DQM53_RS06630 (NCTC6179_01371) - 1306150..1306524 (-) 375 WP_111716797.1 hypothetical protein -
  DQM53_RS06635 (NCTC6179_01372) - 1306535..1306906 (-) 372 WP_111716799.1 hypothetical protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12242.96 Da        Isoelectric Point: 10.0095

>NTDB_id=1138531 DQM53_RS06605 WP_111716789.1 1302935..1303261(-) (ssbB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
MNNTNLIGRLTKKAELYQTPDKKTYARFTIAINRKKKAGGSGSEADFIPCIIWGKGAENLISWTDKGTLISLEGELRTRN
YEKDGQKHFVMEVWSTFFQVLSKPANDN

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1138531 DQM53_RS06605 WP_111716789.1 1302935..1303261(-) (ssbB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
ATGAATAATACAAACTTAATTGGTCGTCTGACTAAAAAGGCTGAGCTATATCAAACGCCAGATAAGAAGACCTATGCCCG
ATTTACAATAGCGATTAATCGGAAAAAGAAAGCAGGTGGGTCAGGAAGTGAGGCCGATTTCATTCCCTGCATCATCTGGG
GGAAGGGAGCTGAAAATCTTATCAGTTGGACCGACAAAGGAACACTCATCAGTCTAGAGGGAGAACTACGAACTCGCAAT
TATGAAAAAGATGGGCAAAAGCACTTTGTCATGGAGGTTTGGTCAACCTTTTTCCAAGTCTTATCAAAGCCAGCTAATGA
CAACTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

49.057

98.148

0.481
  ssbB/cilA Streptococcus pneumoniae TIGR4

50

96.296

0.481
  ssbB/cilA Streptococcus mitis NCTC 12261

50

96.296

0.481
  ssbB/cilA Streptococcus mitis SK321

50

96.296

0.481
  ssbB/cilA Streptococcus pneumoniae D39

49.038

96.296

0.472
  ssbB/cilA Streptococcus pneumoniae R6

49.038

96.296

0.472
  ssbB/cilA Streptococcus pneumoniae Rx1

49.038

96.296

0.472
  ssbA Streptococcus mutans UA159

47.619

97.222

0.463
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.667

97.222

0.454
  ssbA Bacillus subtilis subsp. subtilis str. 168

43.925

99.074

0.435
  ssb Latilactobacillus sakei subsp. sakei 23K

41.176

94.444

0.389

Multiple sequence alignment