Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQM53_RS00840 Genome accession   NZ_LS483361
Coordinates   137452..137847 (+) Length   131 a.a.
NCBI ID   WP_111714809.1    Uniprot ID   A0A9X7SC97
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 132452..142847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM53_RS00805 (NCTC6179_00164) proC 132814..133590 (-) 777 WP_111714795.1 pyrroline-5-carboxylate reductase -
  DQM53_RS00810 (NCTC6179_00165) pepA 133637..134704 (-) 1068 WP_111714798.1 glutamyl aminopeptidase -
  DQM53_RS11290 - 135262..135429 (+) 168 WP_231871991.1 hypothetical protein -
  DQM53_RS11295 - 135438..135545 (+) 108 WP_231871992.1 DUF4651 domain-containing protein -
  DQM53_RS00825 (NCTC6179_00166) - 135542..135859 (+) 318 WP_111714801.1 thioredoxin family protein -
  DQM53_RS00830 (NCTC6179_00167) ytpR 135878..136504 (+) 627 WP_111714803.1 YtpR family tRNA-binding protein -
  DQM53_RS00835 (NCTC6179_00168) - 136645..137373 (-) 729 WP_111714806.1 class I SAM-dependent methyltransferase -
  DQM53_RS00840 (NCTC6179_00169) ssbA 137452..137847 (+) 396 WP_111714809.1 single-stranded DNA-binding protein Machinery gene
  DQM53_RS00845 (NCTC6179_00170) - 138357..139319 (+) 963 WP_111714811.1 ABC transporter substrate-binding protein -
  DQM53_RS00850 (NCTC6179_00171) - 139349..140227 (+) 879 WP_111714814.1 ABC transporter substrate-binding protein -
  DQM53_RS00855 (NCTC6179_00172) - 140645..141529 (+) 885 WP_111714817.1 ABC transporter permease -
  DQM53_RS00860 (NCTC6179_00173) - 141538..142341 (+) 804 WP_111714819.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14799.97 Da        Isoelectric Point: 7.1671

>NTDB_id=1138503 DQM53_RS00840 WP_111714809.1 137452..137847(+) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVANDLVDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1138503 DQM53_RS00840 WP_111714809.1 137452..137847(+) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTGGCCAAACCAGAATTGGTAAAAACCGCTACAGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCGGGAGAGCGAGAAGCAGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCAGAAACCTTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGACGGTGAACTTAGAACCCGT
AAATATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTGCTATGCCAGTCTTTTCAGTTATTAGAAAGTCGTGCTCA
GCGTGCGATGCGAGAAAATAATGTCGCCAATGACTTGGTAGATTTGGTTCTAGAAGAGGAGGAGTTGCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.809

100

0.748
  ssbB/cilA Streptococcus pneumoniae D39

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.154

89.313

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment