Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQM47_RS00740 Genome accession   NZ_LS483360
Coordinates   112317..112712 (+) Length   131 a.a.
NCBI ID   WP_023610874.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC10876     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107317..117712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM47_RS00705 - 108182..108490 (+) 309 Protein_89 hypothetical protein -
  DQM47_RS00710 (NCTC10876_00141) proC 108573..109343 (-) 771 WP_023610882.1 pyrroline-5-carboxylate reductase -
  DQM47_RS00715 (NCTC10876_00142) pepA 109391..110458 (-) 1068 WP_023610877.1 glutamyl aminopeptidase -
  DQM47_RS00725 (NCTC10876_00143) - 110923..111207 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  DQM47_RS00730 (NCTC10876_00144) - 111204..111521 (+) 318 WP_002992751.1 thioredoxin family protein -
  DQM47_RS00735 (NCTC10876_00145) ytpR 111539..112165 (+) 627 WP_011017256.1 YtpR family tRNA-binding protein -
  DQM47_RS00740 (NCTC10876_00146) ssbA 112317..112712 (+) 396 WP_023610874.1 single-stranded DNA-binding protein Machinery gene
  DQM47_RS00750 (NCTC10876_00147) - 112972..113613 (-) 642 WP_002986504.1 deoxynucleoside kinase -
  DQM47_RS00755 (NCTC10876_00148) dusB 113633..114610 (-) 978 WP_021775420.1 tRNA dihydrouridine synthase DusB -
  DQM47_RS00760 (NCTC10876_00149) hslO 114597..115469 (-) 873 WP_002986499.1 Hsp33 family molecular chaperone HslO -
  DQM47_RS00765 (NCTC10876_00150) rofA 115616..117109 (-) 1494 WP_063633003.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14801.98 Da        Isoelectric Point: 8.0157

>NTDB_id=1138448 DQM47_RS00740 WP_023610874.1 112317..112712(+) (ssbA) [Streptococcus pyogenes strain NCTC10876]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNITNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1138448 DQM47_RS00740 WP_023610874.1 112317..112712(+) (ssbA) [Streptococcus pyogenes strain NCTC10876]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCTGATTTTATTTCAGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
ACGCGCTATGAGAGAAAATAATATTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

61.404

87.023

0.534
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment