Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQL39_RS07565 Genome accession   NZ_LS483353
Coordinates   1477494..1477889 (-) Length   131 a.a.
NCBI ID   WP_003053955.1    Uniprot ID   A0AAE9R0G1
Organism   Streptococcus pyogenes strain NCTC4001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1472494..1482889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL39_RS07540 (NCTC4001_01501) rofA 1473097..1474590 (+) 1494 WP_038433631.1 transcriptional regulator RofA -
  DQL39_RS07545 (NCTC4001_01502) hslO 1474737..1475609 (+) 873 WP_012766459.1 Hsp33 family molecular chaperone HslO -
  DQL39_RS07550 (NCTC4001_01503) dusB 1475596..1476573 (+) 978 WP_038433632.1 tRNA dihydrouridine synthase DusB -
  DQL39_RS07555 (NCTC4001_01504) - 1476593..1477234 (+) 642 WP_002986504.1 deoxynucleoside kinase -
  DQL39_RS07565 (NCTC4001_01505) ssbA 1477494..1477889 (-) 396 WP_003053955.1 single-stranded DNA-binding protein Machinery gene
  DQL39_RS07570 (NCTC4001_01506) ytpR 1478041..1478667 (-) 627 WP_002986511.1 YtpR family tRNA-binding protein -
  DQL39_RS07575 (NCTC4001_01507) - 1478685..1479002 (-) 318 WP_038433633.1 thioredoxin family protein -
  DQL39_RS07580 - 1478999..1479199 (-) 201 WP_331852176.1 DUF4651 domain-containing protein -
  DQL39_RS09310 - 1479139..1479282 (-) 144 WP_331852181.1 hypothetical protein -
  DQL39_RS07585 (NCTC4001_01508) - 1479426..1480415 (+) 990 WP_111718099.1 IS30-like element IS1239 family transposase -
  DQL39_RS07595 (NCTC4001_01509) pepA 1480833..1481900 (+) 1068 WP_038433087.1 glutamyl aminopeptidase -
  DQL39_RS07600 (NCTC4001_01510) proC 1481948..1482718 (+) 771 WP_038433086.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14787.96 Da        Isoelectric Point: 8.0157

>NTDB_id=1138114 DQL39_RS07565 WP_003053955.1 1477494..1477889(-) (ssbA) [Streptococcus pyogenes strain NCTC4001]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1138114 DQL39_RS07565 WP_003053955.1 1477494..1477889(-) (ssbA) [Streptococcus pyogenes strain NCTC4001]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCGGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCTGAAACCTTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGTGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment