Detailed information NTG1137804

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: DQM48_RS00810
• Genome accession: NZ_LS483348
• Coordinates: 117973..118368 (+)
• Length: 131 a.a.
• NCBI ID: WP_020916006.1
• Uniprot ID: A0AB33AJI7
• Organism: Streptococcus lutetiensis strain NCTC8738
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	112297..119233	117973..118368	within	0
IS/Tn	118553..119233	117973..118368	flank	185

Gene organization within MGE regions

Location: 112297..119233

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM48_RS00760 (NCTC8738_00152)	-	112297..112494 (+)	198	WP_020915996.1	helix-turn-helix transcriptional regulator	-
DQM48_RS00765 (NCTC8738_00153)	-	112511..112711 (+)	201	WP_111699164.1	hypothetical protein	-
DQM48_RS00770 (NCTC8738_00154)	-	112712..113167 (+)	456	WP_231853254.1	ABC transporter permease	-
DQM48_RS00775 (NCTC8738_00155)	-	113182..113817 (+)	636	WP_043894885.1	CPBP family intramembrane glutamic endopeptidase	-
DQM48_RS00780 (NCTC8738_00156)	proC	113854..114624 (-)	771	WP_020916000.1	pyrroline-5-carboxylate reductase	-
DQM48_RS00785 (NCTC8738_00157)	pepA	114686..115753 (-)	1068	WP_020916001.1	glutamyl aminopeptidase	-
DQM48_RS00790 (NCTC8738_00158)	-	115871..116164 (+)	294	WP_043894886.1	DUF4651 domain-containing protein	-
DQM48_RS00795 (NCTC8738_00159)	-	116157..116474 (+)	318	WP_111698158.1	thioredoxin family protein	-
DQM48_RS00800 (NCTC8738_00160)	ytpR	116483..117109 (+)	627	WP_014334214.1	YtpR family tRNA-binding protein	-
DQM48_RS00805 (NCTC8738_00161)	-	117146..117862 (-)	717	WP_020916005.1	class I SAM-dependent methyltransferase	-
DQM48_RS00810 (NCTC8738_00162)	ssbA	117973..118368 (+)	396	WP_020916006.1	single-stranded DNA-binding protein	Machinery gene
DQM48_RS00815 (NCTC8738_00163)	-	118553..119233 (+)	681	WP_111698160.1	IS6 family transposase	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14805.80 Da
• Isoelectric Point: 5.2678

>NTDB_id=1137804 DQM48_RS00810 WP_020916006.1 117973..118368(+) (ssbA) [Streptococcus lutetiensis strain NCTC8738]
MYNKVIMIGRLTAQPELVTTPTEKSVTRVTLAVNRRFKSQNGEREADFISLVVWGSLAETLVSYAGKGSLISVDGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQRAMRENNVANDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=1137804 DQM48_RS00810 WP_020916006.1 117973..118368(+) (ssbA) [Streptococcus lutetiensis strain NCTC8738]
ATGTATAATAAAGTTATTATGATTGGGCGTTTGACAGCGCAGCCTGAATTGGTGACAACGCCAACCGAAAAATCTGTTAC
ACGTGTAACACTAGCCGTTAACCGTCGTTTTAAATCACAAAATGGTGAGCGTGAAGCGGATTTTATTTCGCTTGTGGTTT
GGGGGAGTTTAGCAGAAACGCTCGTTTCTTATGCTGGAAAAGGGAGTTTGATTTCTGTTGATGGAGAGCTTCGTACGCGT
AAATACGAAAAAGATGGTCACACCAATTATGTGACAGAAGTGCTCTGCCATTCTTTCCAACTTTTAGAAAGTCGTGCCCA
ACGTGCCATGCGAGAAAATAATGTGGCAAACGACCTCGCTGACTTAGTTTTAGAAGAGGAAGAATTGCCGTTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-101)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	80.153	100	0.802
ssbB	Streptococcus sobrinus strain NIDR 6715-7	77.099	100	0.771
ssbB/cilA	Streptococcus pneumoniae Rx1	77.099	100	0.771
ssbB/cilA	Streptococcus pneumoniae D39	77.099	100	0.771
ssbB/cilA	Streptococcus pneumoniae R6	77.099	100	0.771
ssbB/cilA	Streptococcus mitis NCTC 12261	76.336	100	0.763
ssbB/cilA	Streptococcus pneumoniae TIGR4	76.336	100	0.763
ssbB/cilA	Streptococcus mitis SK321	75.573	100	0.756
ssbB	Lactococcus lactis subsp. cremoris KW2	62.281	87.023	0.542
ssbA	Bacillus subtilis subsp. subtilis str. 168	50.943	80.916	0.412
ssb	Latilactobacillus sakei subsp. sakei 23K	45.299	89.313	0.405