Detailed information NTG1137724

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: DQM73_RS11165
• Genome accession: NZ_LS483346
• Coordinates: 2248873..2249307 (-)
• Length: 144 a.a.
• NCBI ID: WP_002934686.1
• Uniprot ID: A0AA96NSE4
• Organism: Streptococcus sanguinis strain NCTC11085
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2243873..2254307

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM73_RS11130 (NCTC11085_02188)	-	2243903..2244541 (-)	639	WP_002927094.1	hypothetical protein	-
DQM73_RS11135 (NCTC11085_02189)	-	2244659..2245408 (-)	750	WP_002927096.1	CPBP family intramembrane glutamic endopeptidase	-
DQM73_RS11140 (NCTC11085_02190)	-	2245543..2246736 (-)	1194	WP_002927099.1	acetate kinase	-
DQM73_RS11145 (NCTC11085_02191)	comYH	2246773..2247738 (-)	966	WP_002927105.1	class I SAM-dependent methyltransferase	Machinery gene
DQM73_RS11150 (NCTC11085_02192)	comGG	2247820..2248212 (-)	393	WP_002927107.1	competence type IV pilus minor pilin ComGG	-
DQM73_RS11155 (NCTC11085_02193)	comGF/cglF	2248193..2248630 (-)	438	WP_002927109.1	competence type IV pilus minor pilin ComGF	Machinery gene
DQM73_RS11160 (NCTC11085_02194)	comGE/cglE	2248614..2248907 (-)	294	WP_002911065.1	competence type IV pilus minor pilin ComGE	Machinery gene
DQM73_RS11165 (NCTC11085_02195)	comYD	2248873..2249307 (-)	435	WP_002934686.1	competence type IV pilus minor pilin ComGD	Machinery gene
DQM73_RS11170 (NCTC11085_02196)	comYC	2249267..2249584 (-)	318	WP_002927120.1	competence type IV pilus major pilin ComGC	Machinery gene
DQM73_RS11175 (NCTC11085_02197)	comYB	2249584..2250618 (-)	1035	WP_260469178.1	competence type IV pilus assembly protein ComGB	Machinery gene
DQM73_RS11180 (NCTC11085_02198)	comYA	2250548..2251489 (-)	942	WP_002927124.1	competence type IV pilus ATPase ComGA	Machinery gene
DQM73_RS11185 (NCTC11085_02199)	-	2251619..2251999 (-)	381	WP_002927126.1	DUF1033 family protein	-
DQM73_RS12370 (NCTC11085_02200)	-	2252025..2252252 (-)	228	WP_002927128.1	hypothetical protein	-
DQM73_RS11195 (NCTC11085_02201)	-	2252419..2253525 (-)	1107	WP_002927130.1	glycosyl hydrolase family 8	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16325.70 Da
• Isoelectric Point: 8.4418

>NTDB_id=1137724 DQM73_RS11165 WP_002934686.1 2248873..2249307(-) (comYD) [Streptococcus sanguinis strain NCTC11085]
MENTVAKLKQLPIKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGHEKLSLKISGR
QISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLSKITFQTEDRTVVYQLYMGNGKFKKTTASG

Nucleotide

• Length: 435 bp

>NTDB_id=1137724 DQM73_RS11165 WP_002934686.1 2248873..2249307(-) (comYD) [Streptococcus sanguinis strain NCTC11085]
ATGGAAAACACAGTGGCGAAACTCAAGCAGTTGCCAATTAAGGCTTTTACGCTGCTGGAAAGTCTCCTCGTTCTTTTTGT
TGTTAGTTTTCTACTACTAGGATTATCTGGCTCGGTCAGGGCTGGCTTCAATCAGGTTCAAGAGCAACTCTTCTTTTTAG
AGTTTGAGAGGCTCTACCAGGAGACGCAGAGGCTGAGCTTGGCTGGGCATGAGAAGCTTTCTCTCAAGATTTCAGGACGG
CAGATTTCCAATGGCTATCAAGAGCTGGACTTTCCGCAAACTTTGCAGGAACATGAGCAGCAAGTCATTCAGTTTGACCG
GGCTGGTGGGAATTCATCACTCAGCAAAATTACTTTTCAGACGGAGGACAGGACAGTTGTTTACCAGCTTTATATGGGGA
ATGGCAAGTTTAAAAAGACGACAGCTTCAGGCTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus gordonii str. Challis substr. CH1	60.284	97.917	0.59
comGD/cglD	Streptococcus mitis NCTC 12261	58.333	91.667	0.535
comGD/cglD	Streptococcus pneumoniae Rx1	59.055	88.194	0.521
comGD/cglD	Streptococcus pneumoniae D39	59.055	88.194	0.521
comGD/cglD	Streptococcus pneumoniae R6	59.055	88.194	0.521
comGD/cglD	Streptococcus mitis SK321	59.055	88.194	0.521
comGD/cglD	Streptococcus pneumoniae TIGR4	58.268	88.194	0.514
comYD	Streptococcus mutans UA140	48.837	89.583	0.437
comYD	Streptococcus mutans UA159	48.837	89.583	0.437
comGD	Lactococcus lactis subsp. cremoris KW2	41.221	90.972	0.375