Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQM73_RS02265 Genome accession   NZ_LS483346
Coordinates   434017..436002 (+) Length   661 a.a.
NCBI ID   WP_002925884.1    Uniprot ID   A0A2X3VSR1
Organism   Streptococcus sanguinis strain NCTC11085     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 429017..441002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM73_RS02250 (NCTC11085_00439) amiA 429683..431638 (+) 1956 WP_032908236.1 peptide ABC transporter substrate-binding protein Regulator
  DQM73_RS02255 (NCTC11085_00440) amiA3 431814..433784 (+) 1971 WP_002925886.1 peptide ABC transporter substrate-binding protein Regulator
  DQM73_RS02265 (NCTC11085_00441) amiA 434017..436002 (+) 1986 WP_002925884.1 peptide ABC transporter substrate-binding protein Regulator
  DQM73_RS02270 (NCTC11085_00442) amiC 436067..437563 (+) 1497 WP_002908885.1 ABC transporter permease Regulator
  DQM73_RS02275 (NCTC11085_00443) amiD 437563..438489 (+) 927 WP_002898857.1 oligopeptide ABC transporter permease OppC Regulator
  DQM73_RS02280 (NCTC11085_00444) amiE 438498..439565 (+) 1068 WP_002893620.1 ABC transporter ATP-binding protein Regulator
  DQM73_RS02285 (NCTC11085_00445) amiF 439576..440502 (+) 927 WP_002925868.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 73460.53 Da        Isoelectric Point: 4.6859

>NTDB_id=1137683 DQM73_RS02265 WP_002925884.1 434017..436002(+) (amiA) [Streptococcus sanguinis strain NCTC11085]
MKQSKVLALAGVTLLAAGFLAACSGSKPNTKSGSSDSSNTFNYIYETDPENLNYLTSSKAATTDLTANVIDGLLENDQYG
NLVPSMAEEWTVSPDGKTYTYKLRKDAKWYTSEGEEYADVTAEDFVTGLKYAADNKSETIYLVQDSVKGLKDYISGKIDF
SEVGIKAVDDHTVEYTLNEPESFWNSKTTMGILYPVNKDFLKNQGDKFAQATDPTSLLYNGPFLLKSLTSKSEIQFEKNP
NYWDKENVHVDAVKLSFYDGQDQGKLADQFSQGALTTARLFPTSATYEKVEKDFKDNIVYTPQDASTFLVGTNIDRQSYN
HTAKTSEAQKTSTKKALLNKDFRQALTFAFNRESYASQINGKDGADKLLRNLYIPPTFVQAGDKSFGDLVKEKVVTYGDE
WKDVDFSDGQDGLYNENKAKAEFAKAKEALKADGVEFPIHLDIPVDQTATSKVQRVQSLKQSIEKTLGKDNVVIDVHQLS
KDEVTNITLFAPSAAEEDWDISDNVGWSPDYQDPSTYLDVIKPGGENTKTFLGFDGTDNAAAKQVGLDEYTKLVDEAGAE
KQDLNKRYEKYAAAQAWLTDSALLIPVTSRTGRPTLTKVVPFSVPFAWSGAKAREAASYKYMKLQDEPVTTKDYNSAQEK
WNKERAESNKKAQEELADHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=1137683 DQM73_RS02265 WP_002925884.1 434017..436002(+) (amiA) [Streptococcus sanguinis strain NCTC11085]
ATGAAACAAAGCAAAGTCCTTGCGCTAGCAGGAGTTACTCTTCTTGCAGCTGGCTTTCTTGCTGCTTGCTCTGGCTCTAA
GCCAAACACAAAGTCAGGCAGCTCAGACTCTTCAAACACCTTTAATTATATCTACGAGACAGATCCTGAAAACTTGAACT
ATCTCACTTCAAGTAAAGCTGCTACAACAGACTTGACTGCCAATGTTATTGACGGTCTTTTAGAAAACGACCAATATGGA
AACTTGGTTCCTTCAATGGCAGAGGAATGGACTGTATCACCAGATGGGAAAACCTATACTTATAAGCTTCGCAAAGACGC
TAAGTGGTATACTTCCGAAGGTGAAGAGTACGCAGATGTTACAGCAGAAGACTTTGTTACAGGTCTTAAGTATGCGGCAG
ACAATAAATCTGAAACAATCTACTTGGTTCAGGATTCTGTCAAAGGGCTTAAGGACTATATTTCTGGCAAGATTGATTTC
TCAGAAGTAGGGATCAAAGCAGTCGATGATCATACCGTTGAGTATACTCTTAATGAGCCAGAAAGCTTCTGGAATTCTAA
GACTACAATGGGAATTCTCTACCCAGTAAACAAAGACTTTTTAAAAAACCAAGGTGATAAGTTCGCTCAAGCAACCGATC
CAACAAGCTTGCTTTATAACGGGCCTTTCTTGCTTAAATCATTGACTTCAAAATCTGAAATCCAATTTGAGAAGAATCCT
AATTATTGGGACAAAGAAAATGTTCATGTAGATGCAGTGAAACTCTCTTTCTATGATGGACAAGATCAAGGGAAACTAGC
TGATCAGTTCAGTCAAGGTGCTCTGACAACAGCCAGACTCTTCCCAACTAGTGCGACTTATGAAAAGGTTGAAAAAGACT
TTAAAGATAATATCGTCTATACACCTCAGGATGCCTCCACTTTCTTAGTAGGTACAAACATTGATCGTCAGTCTTACAAT
CATACTGCTAAGACATCGGAAGCTCAAAAAACTTCAACTAAGAAAGCCTTGCTTAACAAGGACTTCCGTCAGGCTTTGAC
CTTTGCCTTCAATCGCGAGTCCTATGCATCTCAGATTAATGGTAAGGACGGAGCAGACAAACTTCTTCGTAACCTTTACA
TCCCACCTACATTTGTGCAGGCTGGTGACAAGTCCTTCGGTGACCTAGTTAAGGAAAAAGTAGTAACTTATGGTGACGAA
TGGAAAGATGTTGACTTCTCAGATGGTCAAGATGGTCTCTATAACGAGAACAAAGCAAAGGCTGAATTTGCTAAAGCAAA
AGAAGCTTTGAAAGCCGATGGCGTAGAATTCCCAATCCATCTGGACATTCCAGTTGATCAAACAGCTACTTCTAAAGTAC
AACGTGTTCAATCCCTCAAGCAGTCTATTGAAAAGACCTTAGGAAAAGATAATGTTGTAATTGATGTTCACCAATTGTCT
AAGGATGAAGTGACTAACATTACCTTGTTTGCTCCTTCTGCTGCTGAAGAAGACTGGGATATTTCAGATAATGTCGGCTG
GTCTCCGGACTATCAAGATCCATCTACTTATCTAGATGTCATCAAACCTGGTGGTGAAAACACCAAGACCTTCTTAGGAT
TTGATGGCACAGATAATGCCGCAGCGAAACAAGTTGGTTTGGATGAATATACCAAGCTGGTTGACGAAGCGGGTGCAGAA
AAGCAAGATTTGAACAAGCGATATGAAAAATATGCGGCTGCTCAGGCTTGGCTGACTGATAGTGCTTTGTTGATTCCGGT
AACTTCTAGAACCGGCCGTCCAACCTTGACTAAGGTAGTGCCTTTCTCAGTACCGTTTGCTTGGTCTGGTGCTAAGGCGC
GTGAAGCAGCAAGTTATAAGTACATGAAATTGCAGGATGAGCCTGTAACGACAAAAGATTATAATAGCGCTCAGGAAAAA
TGGAATAAAGAACGTGCGGAATCTAATAAAAAAGCTCAAGAAGAATTAGCAGACCACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(82-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3VSR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.392

100

0.607
  amiA3 Streptococcus thermophilus LMD-9

60.09

100

0.604
  amiA3 Streptococcus thermophilus LMG 18311

59.789

100

0.601

Multiple sequence alignment