Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   DQM73_RS02270 Genome accession   NZ_LS483346
Coordinates   436067..437563 (+) Length   498 a.a.
NCBI ID   WP_002908885.1    Uniprot ID   A0A2X3UYH6
Organism   Streptococcus sanguinis strain NCTC11085     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 431067..442563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM73_RS02255 (NCTC11085_00440) amiA3 431814..433784 (+) 1971 WP_002925886.1 peptide ABC transporter substrate-binding protein Regulator
  DQM73_RS02265 (NCTC11085_00441) amiA 434017..436002 (+) 1986 WP_002925884.1 peptide ABC transporter substrate-binding protein Regulator
  DQM73_RS02270 (NCTC11085_00442) amiC 436067..437563 (+) 1497 WP_002908885.1 ABC transporter permease Regulator
  DQM73_RS02275 (NCTC11085_00443) amiD 437563..438489 (+) 927 WP_002898857.1 oligopeptide ABC transporter permease OppC Regulator
  DQM73_RS02280 (NCTC11085_00444) amiE 438498..439565 (+) 1068 WP_002893620.1 ABC transporter ATP-binding protein Regulator
  DQM73_RS02285 (NCTC11085_00445) amiF 439576..440502 (+) 927 WP_002925868.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55841.71 Da        Isoelectric Point: 9.8389

>NTDB_id=1137684 DQM73_RS02270 WP_002908885.1 436067..437563(+) (amiC) [Streptococcus sanguinis strain NCTC11085]
MKKYIFMRILRSIVSIFLVTTLTYAIIYTMVPRRLIFKQDPNYNKIATNKDKKTNYENTIFERMGYIDYYDTKELQEKAS
KEDSSVTTEATEANKKIYQKYINKLGNGWKLQKFPLSGEFYAVREVPVYERVFEFYANLIQIDHPNVIQDEENPNLERYI
RFENDPSVGWSLVGSGTKHKYLLYFNGQFPFVHQNFITFNLGNSYPTYANIPVLQVITQGQGQTKSSEVQFPTGKKTSSV
NIYSRTYKTPSKADSQDIAKFGKGDAYTATQSNYQNPSMITSSAIIGLIGVALSYLIAIPLGSYMARLKNTWFDSISTAG
LTFMMSLPTIALVYIVRLAGSAVGLPDSFPILGAGDWRSYVLPAVILGLLSAPWTAVWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSSIPASIVGVIAGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCLSIFALLLGD
ILMTVLDPRIKLTSKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1137684 DQM73_RS02270 WP_002908885.1 436067..437563(+) (amiC) [Streptococcus sanguinis strain NCTC11085]
ATGAAAAAATATATTTTTATGCGTATCTTACGCTCAATTGTGTCGATTTTCTTGGTGACGACCCTGACTTATGCCATTAT
CTATACTATGGTGCCAAGAAGGTTGATTTTCAAGCAGGATCCTAACTATAATAAAATAGCGACTAATAAAGATAAAAAGA
CTAACTATGAAAACACCATCTTTGAGCGGATGGGTTACATTGACTATTATGATACTAAGGAACTGCAGGAGAAAGCCAGC
AAGGAAGATTCTTCTGTTACCACAGAAGCTACAGAAGCAAACAAGAAGATTTATCAGAAGTATATTAATAAACTTGGCAA
TGGCTGGAAATTGCAGAAATTCCCACTAAGTGGTGAGTTCTATGCTGTACGTGAAGTGCCTGTTTATGAGCGTGTCTTTG
AGTTCTATGCTAATTTGATTCAAATTGACCATCCAAATGTTATTCAAGATGAGGAAAATCCAAACCTAGAGCGTTATATC
CGGTTTGAAAATGATCCTTCTGTTGGCTGGTCTCTTGTGGGTTCTGGTACCAAGCATAAGTATCTGCTGTACTTTAATGG
TCAGTTCCCATTTGTCCACCAGAACTTTATTACCTTTAATTTAGGTAATTCTTATCCAACCTATGCTAATATCCCTGTTC
TGCAGGTTATTACACAGGGACAAGGGCAAACTAAGTCTTCTGAAGTTCAATTCCCAACAGGTAAAAAGACATCGTCTGTT
AATATTTATTCTCGTACTTACAAGACGCCAAGCAAAGCCGATTCACAGGACATTGCTAAGTTTGGTAAGGGAGATGCCTA
TACAGCGACTCAAAGCAACTATCAAAATCCATCCATGATTACCAGCTCAGCCATTATTGGTTTGATTGGTGTGGCTCTGT
CTTATCTGATTGCTATTCCGCTCGGTTCCTACATGGCTCGACTTAAGAATACATGGTTTGATAGCATTTCCACAGCAGGT
TTGACCTTCATGATGTCACTGCCAACCATCGCCTTGGTCTACATCGTTCGTTTGGCGGGGTCTGCTGTTGGTCTTCCAGA
CTCCTTCCCAATCTTGGGAGCAGGAGATTGGCGTTCTTATGTCCTTCCAGCTGTTATTTTAGGGCTTTTGAGTGCTCCTT
GGACAGCTGTTTGGATTCGTCGTTATATGATTGACCTGCAGTCTCAGGACTTTGTCCGCTTTGCACGTGCTAAGGGTCTC
TCTGAAAAAGAAATTTCTAACAAGCACATCTTTAAAAACGCTATGGTGCCGCTGGTATCTAGTATCCCAGCTTCTATCGT
TGGTGTTATTGCAGGTGCGACTCTGACAGAAACTGTCTTTGCCTTTCCTGGTATGGGTAAGATGCTGATTGATTCTGTTA
AGGCATCCAATAACTCTATGGTTGTTGGTCTTGTATTCATCTTCACATGTCTGTCTATCTTTGCTCTCTTGCTGGGTGAC
ATTCTGATGACTGTACTGGATCCACGTATTAAGTTAACATCAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3UYH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

75.904

100

0.759
  amiC Streptococcus thermophilus LMD-9

75.703

100

0.757
  amiC Streptococcus thermophilus LMG 18311

75.703

100

0.757

Multiple sequence alignment