Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DQM73_RS02255 Genome accession   NZ_LS483346
Coordinates   431814..433784 (+) Length   656 a.a.
NCBI ID   WP_002925886.1    Uniprot ID   A0A2X3XGU7
Organism   Streptococcus sanguinis strain NCTC11085     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 426814..438784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM73_RS02245 (NCTC11085_00438) pbp3 428122..429390 (-) 1269 WP_002925889.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQM73_RS02250 (NCTC11085_00439) amiA 429683..431638 (+) 1956 WP_032908236.1 peptide ABC transporter substrate-binding protein Regulator
  DQM73_RS02255 (NCTC11085_00440) amiA3 431814..433784 (+) 1971 WP_002925886.1 peptide ABC transporter substrate-binding protein Regulator
  DQM73_RS02265 (NCTC11085_00441) amiA 434017..436002 (+) 1986 WP_002925884.1 peptide ABC transporter substrate-binding protein Regulator
  DQM73_RS02270 (NCTC11085_00442) amiC 436067..437563 (+) 1497 WP_002908885.1 ABC transporter permease Regulator
  DQM73_RS02275 (NCTC11085_00443) amiD 437563..438489 (+) 927 WP_002898857.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72591.17 Da        Isoelectric Point: 4.5400

>NTDB_id=1137682 DQM73_RS02255 WP_002925886.1 431814..433784(+) (amiA3) [Streptococcus sanguinis strain NCTC11085]
MKTSKLAAAAGLVILSAGVLAACSFGGSNSSGKNYSYVYTADPDTLDYTVSNKRATNEIMANVVDGLLESDKYGNLVPSL
AEDWTVSKDGLTYTYKLREGVKWYTSDGEEYADVTAKDFVTSLKHAADSKSDGLYIVQKSIKGLDDYVNGKITDFSQVGV
KAVDDSTVQYTLNQPESFWNSKTTMGILFPINEEFLKSKGDKFAQGTDPTSVLYNGPFILKSITSKSQISLEKNPNYWDK
EKVKIDTVKFSYYDGQDTESLVRGFSDGNYTIARLFPNSSNFASVKKQYGDNIVYTPQGSGTFFVTTNIDRQSYEHTSKT
TDAQKSSTKKALLNKDFRQALLFAFDRTAYSAQTNGEEAADKQLRNTFVPPTFVQANGKEFGSIVEENLASYGDEWKGVK
LDDAQDGFYNPEKAKAEFAKAKEALQAEGVEFPIHLDIPVSSADTNGVKSVQSLKQSIEANLGSDNVVIDIQQMTDDELN
NITYFATSASQEDWDLNNNLGWSPDYNDPSSYLEITGSKTGENVDGYFGFDPGTDNAAAKEAGFEEYDKLLEDAAAENED
INKRYEKYAAAQAWLTDSALLMPAWSSGATPSVRKVVPFSGPFAWTGNKGEYSFKYVEIQDKPITTKEYEKAREKWAKEK
EESNKKAQKELAEHIK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1137682 DQM73_RS02255 WP_002925886.1 431814..433784(+) (amiA3) [Streptococcus sanguinis strain NCTC11085]
ATGAAAACATCTAAGTTAGCTGCAGCTGCTGGGCTTGTCATTCTCTCTGCAGGTGTTTTGGCTGCCTGTTCGTTTGGTGG
CTCCAATTCATCTGGGAAAAACTATAGCTATGTTTATACGGCAGATCCAGATACGCTGGATTACACTGTGTCCAATAAGC
GAGCAACCAATGAGATAATGGCTAATGTAGTAGATGGTTTGCTGGAAAGCGATAAGTATGGTAACTTAGTGCCTTCTCTA
GCGGAAGATTGGACCGTTTCAAAAGATGGTCTGACCTATACTTATAAGCTTCGTGAGGGAGTGAAATGGTATACTTCTGA
TGGTGAAGAGTATGCAGATGTGACTGCTAAGGACTTTGTGACCAGTCTGAAGCATGCTGCAGACAGCAAATCTGATGGTC
TCTATATCGTTCAAAAATCCATTAAAGGCTTGGACGACTATGTCAATGGTAAAATAACTGACTTCTCCCAAGTTGGTGTT
AAGGCGGTGGATGATTCTACTGTTCAATACACTTTGAATCAGCCAGAAAGTTTCTGGAATTCTAAGACAACCATGGGGAT
TCTTTTCCCAATCAATGAAGAATTTCTGAAATCAAAAGGTGACAAATTTGCTCAGGGGACAGATCCAACTAGTGTCCTCT
ATAACGGTCCGTTTATCTTGAAATCTATCACTTCGAAATCTCAAATTAGCTTAGAGAAGAATCCTAACTATTGGGATAAG
GAAAAGGTGAAAATTGATACTGTCAAATTCTCTTACTATGATGGTCAAGATACAGAATCGCTGGTGCGTGGCTTCTCTGA
CGGCAACTACACCATTGCTCGTCTTTTCCCAAACAGCTCAAACTTTGCCAGTGTGAAGAAACAGTATGGCGACAATATCG
TCTACACGCCTCAAGGCTCAGGAACCTTCTTTGTTACAACTAATATTGATCGTCAGTCTTACGAGCATACTTCTAAGACA
ACGGATGCACAGAAATCTTCCACTAAGAAAGCACTGCTCAATAAAGATTTTCGTCAGGCTTTGCTTTTTGCCTTTGACCG
GACTGCCTATTCTGCACAAACCAATGGCGAAGAAGCAGCAGACAAGCAGCTTCGTAATACCTTTGTTCCGCCAACCTTTG
TTCAAGCTAATGGTAAAGAGTTCGGCAGCATTGTAGAAGAAAATCTGGCTAGCTACGGTGATGAGTGGAAGGGAGTTAAA
TTAGACGACGCTCAGGATGGCTTTTATAATCCAGAAAAAGCCAAGGCAGAATTTGCCAAAGCTAAAGAAGCACTGCAAGC
AGAAGGAGTAGAATTCCCTATTCATCTGGATATTCCGGTTAGCTCAGCAGATACCAATGGCGTTAAGAGTGTTCAGTCAC
TGAAGCAGTCTATTGAAGCTAATCTTGGATCTGATAATGTGGTGATTGATATTCAGCAGATGACAGATGATGAGTTGAAT
AACATTACCTACTTTGCGACCTCAGCATCTCAAGAAGACTGGGACTTGAATAATAATCTTGGCTGGAGCCCAGATTATAA
CGATCCTTCTTCTTATCTGGAAATCACTGGCTCTAAGACTGGTGAGAATGTTGACGGCTACTTTGGATTTGATCCTGGTA
CAGACAATGCAGCAGCTAAAGAGGCCGGCTTTGAAGAGTATGATAAACTCTTGGAAGATGCAGCTGCGGAAAACGAGGAC
ATTAACAAACGTTACGAAAAGTATGCAGCAGCTCAGGCTTGGCTGACAGACAGTGCCCTGTTAATGCCAGCTTGGTCATC
TGGTGCAACACCAAGTGTCCGCAAGGTTGTTCCGTTCTCAGGACCATTTGCTTGGACTGGAAACAAGGGTGAATACAGCT
TTAAATATGTTGAAATCCAAGACAAACCAATAACGACTAAAGAATATGAAAAAGCGCGTGAAAAATGGGCAAAAGAAAAG
GAAGAGTCCAACAAAAAAGCTCAAAAAGAACTCGCAGAACATATCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3XGU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.788

100

0.601
  amiA3 Streptococcus thermophilus LMG 18311

59.029

100

0.593
  amiA Streptococcus salivarius strain HSISS4

58.663

100

0.588

Multiple sequence alignment