Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQM73_RS02250 Genome accession   NZ_LS483346
Coordinates   429683..431638 (+) Length   651 a.a.
NCBI ID   WP_032908236.1    Uniprot ID   A0A2X3XDU1
Organism   Streptococcus sanguinis strain NCTC11085     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 424683..436638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM73_RS02230 (NCTC11085_00435) - 424897..426129 (+) 1233 WP_002925896.1 cysteine desulfurase -
  DQM73_RS02235 (NCTC11085_00436) sufU 426116..426553 (+) 438 WP_002925895.1 Fe-S cluster assembly sulfur transfer protein SufU -
  DQM73_RS02240 (NCTC11085_00437) sufB 426571..427983 (+) 1413 WP_002893631.1 Fe-S cluster assembly protein SufB -
  DQM73_RS02245 (NCTC11085_00438) pbp3 428122..429390 (-) 1269 WP_002925889.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQM73_RS02250 (NCTC11085_00439) amiA 429683..431638 (+) 1956 WP_032908236.1 peptide ABC transporter substrate-binding protein Regulator
  DQM73_RS02255 (NCTC11085_00440) amiA3 431814..433784 (+) 1971 WP_002925886.1 peptide ABC transporter substrate-binding protein Regulator
  DQM73_RS02265 (NCTC11085_00441) amiA 434017..436002 (+) 1986 WP_002925884.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 651 a.a.        Molecular weight: 72393.13 Da        Isoelectric Point: 4.5618

>NTDB_id=1137681 DQM73_RS02250 WP_032908236.1 429683..431638(+) (amiA) [Streptococcus sanguinis strain NCTC11085]
MKKSKWLAIAGLTVVSTLILAACGNSNASNTYSYVYSNDPDTLDYVNSNRATTSDVIANLVDGLLENDEYGNLVPSIAED
WTVSKDGLTYTYKLRKDAKWYTSDGEEYSEVKAQDFVTGLKHAADEKSEALPIVQSSIKGLDAYVKGESNDFSTVGVKAV
DDYTVEYTLNQPESYWNSKTTMGILFPINEDFLKSQGKDFGTVKPSSILYNGPYVLKAFTSKSVIEYAKNQNYWDKDNVK
IENVKLTYYDGSDQEALIRNFSDGAYSQARLYPTSSNYASVEKQYKDNIIFSPQNSTSFYFAFNLNRKTYNHSSKTSDAQ
KASTTAAIQNKDFRQAINFAFDRTSFGAQMNGKDGATKLIRSLLVPPSFVQVDGKDFSDVVESKLPTYGDEWSGVKLTDA
QDSIYNADKAKAEFAKAKEALQAEGVEFPIHIDIPVDQTDKVLVQRTNSFKQSVEAALGQDNVVIDVQQMSTDDFDNSAY
FAETAAQKDYDLNMSGWSADYQDPSTYLNIFNPETGDATDNIGLEKGKNADVANKVGLNEYKELLDEADKEKQDTNARYT
KYAAAQAWLTDSSIVIPGVSGGGSPVVQKVVPFTKSYSYVGIKGDVYVFKNMELQNDIVTAKDYEAALKKWEKEKEASNK
KAQEELEKHIK

Nucleotide


Download         Length: 1956 bp        

>NTDB_id=1137681 DQM73_RS02250 WP_032908236.1 429683..431638(+) (amiA) [Streptococcus sanguinis strain NCTC11085]
ATGAAAAAATCAAAATGGTTGGCCATTGCTGGACTAACAGTCGTGTCAACACTAATCTTAGCTGCTTGTGGAAATTCCAA
CGCAAGCAATACCTATTCTTATGTCTATTCGAATGACCCTGATACTTTGGACTATGTCAATTCAAATCGAGCTACTACTT
CTGATGTTATTGCAAACTTGGTGGATGGCCTTTTAGAAAATGATGAATATGGCAATCTGGTTCCATCTATTGCGGAAGAC
TGGACGGTTTCAAAGGACGGTCTGACCTATACCTATAAGCTTCGCAAAGATGCTAAATGGTATACATCAGACGGTGAAGA
ATACTCAGAGGTTAAAGCTCAAGACTTTGTCACTGGTTTGAAGCATGCGGCAGATGAAAAATCAGAAGCTCTTCCAATCG
TCCAAAGCTCTATCAAAGGCTTGGATGCCTATGTCAAGGGTGAGTCAAATGACTTTTCAACCGTCGGTGTCAAGGCTGTC
GATGACTATACGGTTGAGTATACTCTTAACCAGCCAGAAAGTTATTGGAACTCTAAAACTACTATGGGGATTCTGTTCCC
AATCAATGAGGATTTCTTAAAGTCACAAGGCAAAGATTTTGGGACCGTAAAACCTTCCTCTATTCTTTATAATGGCCCTT
ATGTTCTGAAAGCATTCACTTCTAAGTCTGTCATTGAATATGCTAAAAACCAGAACTACTGGGATAAGGACAATGTCAAG
ATTGAAAATGTGAAGCTGACTTACTATGATGGTTCTGACCAAGAAGCTTTGATTCGTAACTTCTCAGATGGAGCCTACTC
TCAAGCGCGACTTTATCCGACAAGTTCTAACTACGCTTCTGTAGAAAAGCAATACAAAGATAATATTATCTTCTCACCGC
AGAATTCAACTAGTTTCTATTTTGCTTTCAATCTGAATCGTAAGACTTATAATCATTCGTCTAAGACATCAGATGCTCAA
AAGGCATCAACTACAGCGGCTATTCAAAATAAAGACTTCCGTCAGGCAATCAACTTTGCCTTTGACCGGACATCTTTTGG
AGCTCAGATGAATGGTAAAGATGGGGCGACTAAACTCATCCGTAGCTTACTTGTTCCTCCTAGCTTCGTGCAGGTTGATG
GCAAAGACTTTTCAGATGTAGTAGAGAGCAAACTTCCTACATACGGTGATGAGTGGAGCGGTGTCAAACTGACAGATGCC
CAAGACAGCATCTACAATGCTGACAAGGCCAAGGCTGAGTTTGCTAAGGCTAAGGAAGCCTTGCAAGCAGAAGGTGTTGA
ATTCCCGATTCATATCGATATCCCTGTGGATCAGACTGACAAAGTCTTAGTGCAGCGGACTAACTCTTTCAAACAGTCTG
TTGAAGCAGCACTCGGTCAGGACAATGTCGTCATTGATGTTCAGCAAATGTCTACAGATGACTTTGATAACTCTGCCTAC
TTTGCAGAAACAGCAGCTCAGAAGGACTACGACCTCAACATGTCCGGCTGGTCAGCAGACTACCAAGATCCATCAACTTA
TCTGAATATTTTCAACCCAGAAACGGGTGACGCTACAGATAATATTGGTTTAGAAAAAGGGAAAAATGCTGATGTTGCAA
ATAAAGTTGGCTTGAATGAATACAAAGAGTTATTGGATGAGGCAGATAAGGAAAAACAAGATACCAACGCTCGTTATACC
AAATACGCAGCAGCTCAGGCTTGGCTGACAGATAGCTCCATTGTTATTCCTGGTGTTTCTGGCGGTGGTTCACCAGTTGT
TCAGAAGGTCGTGCCATTTACCAAGTCATACTCTTATGTCGGAATCAAAGGAGATGTCTATGTCTTTAAGAACATGGAGC
TCCAAAATGATATTGTGACAGCCAAAGACTATGAAGCGGCTCTTAAGAAATGGGAAAAAGAAAAGGAAGCATCCAATAAA
AAAGCCCAAGAAGAGCTAGAAAAACATATCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(73-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3XDU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.23

100

0.578
  amiA3 Streptococcus thermophilus LMD-9

56.146

100

0.568
  amiA3 Streptococcus thermophilus LMG 18311

55.842

100

0.565

Multiple sequence alignment