Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQM73_RS02275 Genome accession   NZ_LS483346
Coordinates   437563..438489 (+) Length   308 a.a.
NCBI ID   WP_002898857.1    Uniprot ID   A0A2X4CY31
Organism   Streptococcus sanguinis strain NCTC11085     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 432563..443489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM73_RS02265 (NCTC11085_00441) amiA 434017..436002 (+) 1986 WP_002925884.1 peptide ABC transporter substrate-binding protein Regulator
  DQM73_RS02270 (NCTC11085_00442) amiC 436067..437563 (+) 1497 WP_002908885.1 ABC transporter permease Regulator
  DQM73_RS02275 (NCTC11085_00443) amiD 437563..438489 (+) 927 WP_002898857.1 oligopeptide ABC transporter permease OppC Regulator
  DQM73_RS02280 (NCTC11085_00444) amiE 438498..439565 (+) 1068 WP_002893620.1 ABC transporter ATP-binding protein Regulator
  DQM73_RS02285 (NCTC11085_00445) amiF 439576..440502 (+) 927 WP_002925868.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34624.69 Da        Isoelectric Point: 9.8486

>NTDB_id=1137685 DQM73_RS02275 WP_002898857.1 437563..438489(+) (amiD) [Streptococcus sanguinis strain NCTC11085]
MATIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFLKKKSTITMLGILIAIILMSFIYPMFSNFDFNDVSKVNDFSMR
YIKPSAQYWFGTDSNGKSLFDGVWFGARNSILISIIATVINLAIGVIIGGIWGISKTVDRVMMEIYNIISNIPALLIVIV
LTYSIGAGFWNLIFAMTITGWVGIAYTIRVQIMRYRDLEYNLASRTLGTPTLKIVTKNIMPQLVSVIVTTTSQMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLTFFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1137685 DQM73_RS02275 WP_002898857.1 437563..438489(+) (amiD) [Streptococcus sanguinis strain NCTC11085]
ATGGCTACAATTGATAAAAGCAAATTCCAATTTGTCAAACGTGACGATTTTGCCTCTGAAACGATTGATGCTCCAGCCTA
TTCTTACTGGAAATCAGTCATGCGTCAATTTCTGAAAAAGAAATCAACCATTACCATGCTGGGGATTCTGATTGCCATTA
TTCTCATGAGCTTCATTTATCCTATGTTTTCAAACTTCGACTTTAATGACGTGAGCAAGGTAAATGACTTTAGCATGCGT
TATATCAAGCCAAGTGCTCAATACTGGTTTGGAACGGACAGTAATGGTAAGTCTCTCTTTGACGGTGTTTGGTTTGGTGC
CCGTAACTCTATTCTTATTTCGATTATTGCGACGGTTATTAATCTGGCTATCGGAGTTATCATTGGCGGTATCTGGGGAA
TTTCCAAAACAGTTGACCGTGTCATGATGGAAATCTACAATATCATTTCAAATATCCCAGCCCTCTTGATTGTCATTGTC
TTGACCTACTCTATCGGTGCTGGTTTCTGGAATTTGATTTTTGCCATGACGATTACTGGTTGGGTCGGTATTGCCTACAC
CATCCGTGTGCAGATTATGCGCTATCGGGATTTGGAGTACAACCTTGCCTCTCGTACCCTTGGTACACCAACTCTCAAGA
TTGTAACAAAGAACATTATGCCTCAGTTGGTATCTGTTATCGTGACTACCACTTCACAGATGCTGCCAAGCTTTATCTCT
TACGAAGCCTTTCTGTCCTTCTTTGGATTAGGTCTTCCTGTAACAGTGCCAAGTTTGGGACGCCTGATTTCAGATTATTC
ACAAAACGTGACGACAAATGCCTACCTCTTTTGGATTCCACTCACAACTCTGATTTTGGTATCTCTTACCTTCTTCGTAG
TTGGTCAAAACTTAGCTGACGCCAGCGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X4CY31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

86.364

100

0.864
  amiD Streptococcus thermophilus LMG 18311

84.416

100

0.844
  amiD Streptococcus thermophilus LMD-9

84.416

100

0.844

Multiple sequence alignment