Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   DQM73_RS02280 Genome accession   NZ_LS483346
Coordinates   438498..439565 (+) Length   355 a.a.
NCBI ID   WP_002893620.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC11085     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 433498..444565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM73_RS02265 (NCTC11085_00441) amiA 434017..436002 (+) 1986 WP_002925884.1 peptide ABC transporter substrate-binding protein Regulator
  DQM73_RS02270 (NCTC11085_00442) amiC 436067..437563 (+) 1497 WP_002908885.1 ABC transporter permease Regulator
  DQM73_RS02275 (NCTC11085_00443) amiD 437563..438489 (+) 927 WP_002898857.1 oligopeptide ABC transporter permease OppC Regulator
  DQM73_RS02280 (NCTC11085_00444) amiE 438498..439565 (+) 1068 WP_002893620.1 ABC transporter ATP-binding protein Regulator
  DQM73_RS02285 (NCTC11085_00445) amiF 439576..440502 (+) 927 WP_002925868.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39473.11 Da        Isoelectric Point: 4.6923

>NTDB_id=1137686 DQM73_RS02280 WP_002893620.1 438498..439565(+) (amiE) [Streptococcus sanguinis strain NCTC11085]
MTKNENVILTARDIVVEFDVRDRVLTAIRGVSLDLIEGEVLAIVGESGSGKSVLTKTFTGMLEENGRVAQGTIDYRGKDL
TTLRSNKDWEPIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKSAKEAKKMAIDYMSKVGIPDAEKRFEEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQQEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEIFYEPKHPYTWSLLSSLPQLADANGALYSIPGTPPSLYSPIKGDAFALRSDYAMSIDFEEEAPAFNVSDTHWAK
TWLLHEDAPKVDKPEIIENLHEKIRSKMGFNQLEA

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1137686 DQM73_RS02280 WP_002893620.1 438498..439565(+) (amiE) [Streptococcus sanguinis strain NCTC11085]
ATGACAAAGAATGAAAATGTAATATTGACTGCTCGCGATATTGTCGTGGAATTCGATGTTCGCGATCGTGTCTTAACCGC
CATTCGTGGAGTCTCTCTGGACTTGATTGAAGGTGAAGTACTGGCTATTGTTGGTGAATCTGGTTCAGGTAAGTCTGTCT
TAACCAAGACATTTACTGGTATGTTAGAAGAAAATGGCCGTGTGGCCCAAGGAACCATTGACTACCGCGGTAAAGATTTG
ACAACTCTTCGTAGTAATAAGGATTGGGAGCCAATTCGCGGTGCAAAAATTGCGACTATCTTCCAAGATCCGATGACGAG
CTTGGATCCCATTAATACGATTGGAAGCCAGATTACAGAAGTCATTATCAAGCACCAGGGAAAATCAGCCAAAGAAGCTA
AAAAAATGGCCATTGATTATATGAGTAAGGTCGGGATTCCAGATGCGGAAAAACGTTTCGAAGAATATCCTTTCCAATAC
TCAGGTGGTATGCGTCAGCGGATTGTTATTGCTATTGCCTTGGCTTGCCGTCCTGATATTCTTATCTGTGATGAGCCGAC
AACGGCCCTCGATGTAACGATTCAAGCGCAAATCATTGACTTGCTCAAATCCTTGCAGCAAGAATATCATTTCACAACCA
TCTTTATTACGCACGACCTTGGTGTTGTGGCTAGTATTGCAGATAAGGTTGCGGTCATGTATGCCGGTGAAATTGTAGAA
TACGGCACAGTTGAAGAAATCTTCTATGAGCCAAAACATCCTTACACATGGAGCTTGCTATCCAGCTTGCCTCAGTTGGC
AGATGCGAATGGTGCTCTTTACTCGATTCCTGGAACTCCGCCGTCACTTTATTCACCAATCAAAGGGGATGCCTTTGCTT
TGCGTTCTGACTATGCCATGTCAATTGACTTTGAAGAAGAAGCACCGGCTTTCAATGTTTCAGATACTCATTGGGCAAAG
ACTTGGTTGCTACACGAAGATGCGCCTAAGGTTGATAAACCAGAGATTATCGAAAATCTACATGAAAAAATTCGTTCAAA
AATGGGCTTCAATCAATTAGAAGCTTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

86.686

99.437

0.862
  amiE Streptococcus thermophilus LMG 18311

86.119

99.437

0.856
  amiE Streptococcus thermophilus LMD-9

86.119

99.437

0.856
  oppD Streptococcus mutans UA159

57.018

96.338

0.549

Multiple sequence alignment