Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQL21_RS01685 Genome accession   NZ_LS483343
Coordinates   305906..306301 (+) Length   131 a.a.
NCBI ID   WP_018031111.1    Uniprot ID   A0A2X3VDA1
Organism   Streptococcus ferus strain NCTC12278     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 300906..311301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL21_RS01650 (NCTC12278_00316) - 301162..301866 (+) 705 WP_018031104.1 hypothetical protein -
  DQL21_RS01655 (NCTC12278_00317) - 301917..302585 (+) 669 WP_018031105.1 CPBP family intramembrane glutamic endopeptidase -
  DQL21_RS01660 (NCTC12278_00318) proC 302625..303407 (-) 783 WP_018031106.1 pyrroline-5-carboxylate reductase -
  DQL21_RS01665 (NCTC12278_00319) pepA 303420..304484 (-) 1065 WP_018031107.1 glutamyl aminopeptidase -
  DQL21_RS01670 (NCTC12278_00320) - 304594..304875 (+) 282 WP_018031108.1 DUF4651 domain-containing protein -
  DQL21_RS01675 (NCTC12278_00321) - 304886..305203 (+) 318 WP_018031109.1 thioredoxin family protein -
  DQL21_RS01680 (NCTC12278_00322) ytpR 305210..305836 (+) 627 WP_018031110.1 YtpR family tRNA-binding protein -
  DQL21_RS01685 (NCTC12278_00323) ssbA 305906..306301 (+) 396 WP_018031111.1 single-stranded DNA-binding protein Machinery gene
  DQL21_RS01690 (NCTC12278_00324) - 306441..307403 (+) 963 WP_408641234.1 sugar ABC transporter substrate-binding protein -
  DQL21_RS01695 (NCTC12278_00325) - 307403..308752 (+) 1350 WP_018031113.1 sensor histidine kinase -
  DQL21_RS01700 (NCTC12278_00326) - 308727..309404 (+) 678 WP_018031114.1 response regulator transcription factor -
  DQL21_RS01705 (NCTC12278_00327) - 309401..310708 (+) 1308 WP_018031115.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14752.69 Da        Isoelectric Point: 6.7316

>NTDB_id=1137578 DQL21_RS01685 WP_018031111.1 305906..306301(+) (ssbA) [Streptococcus ferus strain NCTC12278]
MYNKVIMIGRLTATPEMVKTATDKSVTRATLAVNRRFKGQDGEKQADFVNIVFWGKLAESLASYGSKGSLLSIDGELRTR
HYEKDGSKHYVTEVLGHSFQLLESRAQRAMRENNAANDLTDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1137578 DQL21_RS01685 WP_018031111.1 305906..306301(+) (ssbA) [Streptococcus ferus strain NCTC12278]
ATGTACAACAAAGTTATCATGATTGGTCGCCTGACAGCGACGCCTGAAATGGTTAAAACAGCAACTGACAAATCGGTCAC
ACGGGCAACTTTAGCCGTTAACCGCCGTTTTAAGGGACAGGATGGTGAGAAACAGGCTGATTTCGTCAATATTGTGTTCT
GGGGGAAATTAGCTGAAAGCCTTGCATCTTATGGCAGTAAGGGGAGCCTGCTCTCCATTGACGGGGAGCTTCGGACTCGC
CATTATGAAAAAGATGGCAGTAAACACTACGTCACCGAGGTCTTAGGCCATTCCTTCCAGCTTTTAGAAAGCCGTGCCCA
GCGTGCTATGCGTGAAAACAATGCTGCCAATGATTTAACGGATCTGGTTTTAGAAGAAGAGGAGCTTCCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3VDA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

84.733

100

0.847
  ssbB Streptococcus sobrinus strain NIDR 6715-7

81.679

100

0.817
  ssbB/cilA Streptococcus mitis NCTC 12261

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae R6

75.573

100

0.756
  ssbB/cilA Streptococcus pneumoniae Rx1

75.573

100

0.756
  ssbB/cilA Streptococcus pneumoniae D39

75.573

100

0.756
  ssbB/cilA Streptococcus pneumoniae TIGR4

74.809

100

0.748
  ssbB/cilA Streptococcus mitis SK321

74.046

100

0.74
  ssbB Lactococcus lactis subsp. cremoris KW2

58.929

85.496

0.504
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382
  ssb Latilactobacillus sakei subsp. sakei 23K

42.735

89.313

0.382

Multiple sequence alignment