Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQL04_RS00745 Genome accession   NZ_LS483340
Coordinates   112159..112554 (+) Length   131 a.a.
NCBI ID   WP_003053955.1    Uniprot ID   A0AAE9R0G1
Organism   Streptococcus pyogenes strain NCTC12062     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107159..117554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL04_RS00710 - 108024..108332 (+) 309 WP_011284425.1 hypothetical protein -
  DQL04_RS00715 (NCTC12062_00144) proC 108415..109185 (-) 771 WP_032464773.1 pyrroline-5-carboxylate reductase -
  DQL04_RS00720 (NCTC12062_00145) pepA 109233..110300 (-) 1068 WP_032464774.1 glutamyl aminopeptidase -
  DQL04_RS00730 (NCTC12062_00146) - 110765..111049 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  DQL04_RS00735 (NCTC12062_00147) - 111046..111363 (+) 318 WP_002986515.1 thioredoxin family protein -
  DQL04_RS00740 (NCTC12062_00148) ytpR 111381..112007 (+) 627 WP_023613126.1 YtpR family tRNA-binding protein -
  DQL04_RS00745 (NCTC12062_00149) ssbA 112159..112554 (+) 396 WP_003053955.1 single-stranded DNA-binding protein Machinery gene
  DQL04_RS00755 (NCTC12062_00150) - 112814..113455 (-) 642 WP_023613129.1 deoxynucleoside kinase -
  DQL04_RS00760 (NCTC12062_00151) dusB 113475..114452 (-) 978 WP_023611504.1 tRNA dihydrouridine synthase DusB -
  DQL04_RS00765 (NCTC12062_00152) hslO 114439..115311 (-) 873 WP_047235614.1 Hsp33 family molecular chaperone HslO -
  DQL04_RS00770 (NCTC12062_00153) rofA 115458..116951 (-) 1494 WP_047235615.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14787.96 Da        Isoelectric Point: 8.0157

>NTDB_id=1137405 DQL04_RS00745 WP_003053955.1 112159..112554(+) (ssbA) [Streptococcus pyogenes strain NCTC12062]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1137405 DQL04_RS00745 WP_003053955.1 112159..112554(+) (ssbA) [Streptococcus pyogenes strain NCTC12062]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTGGCTAAACCAGAATTGGTAAAAACCGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCGGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
ACGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment