Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQL28_RS00740 Genome accession   NZ_LS483334
Coordinates   111795..112190 (+) Length   131 a.a.
NCBI ID   WP_046177419.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12050     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 106795..117190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL28_RS00705 - 107661..107969 (+) 309 Protein_89 hypothetical protein -
  DQL28_RS00710 (NCTC12050_00141) proC 108052..108822 (-) 771 WP_063631714.1 pyrroline-5-carboxylate reductase -
  DQL28_RS00715 (NCTC12050_00142) pepA 108870..109937 (-) 1068 WP_063631715.1 glutamyl aminopeptidase -
  DQL28_RS00725 (NCTC12050_00143) - 110402..110683 (+) 282 WP_024623420.1 DUF4651 domain-containing protein -
  DQL28_RS00730 (NCTC12050_00144) - 110683..111000 (+) 318 WP_002987805.1 thioredoxin family protein -
  DQL28_RS00735 (NCTC12050_00145) ytpR 111018..111644 (+) 627 WP_111676052.1 YtpR family tRNA-binding protein -
  DQL28_RS00740 (NCTC12050_00146) ssbA 111795..112190 (+) 396 WP_046177419.1 single-stranded DNA-binding protein Machinery gene
  DQL28_RS00750 (NCTC12050_00147) - 112450..113091 (-) 642 WP_046177420.1 deoxynucleoside kinase -
  DQL28_RS00755 (NCTC12050_00148) dusB 113111..114088 (-) 978 WP_111676056.1 tRNA dihydrouridine synthase DusB -
  DQL28_RS00760 (NCTC12050_00149) hslO 114075..114947 (-) 873 WP_023612543.1 Hsp33 family molecular chaperone HslO -
  DQL28_RS00765 (NCTC12050_00150) nra 115073..116608 (-) 1536 WP_111676058.1 transcriptional regulator Nra -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14786.97 Da        Isoelectric Point: 8.8846

>NTDB_id=1137062 DQL28_RS00740 WP_046177419.1 111795..112190(+) (ssbA) [Streptococcus pyogenes strain NCTC12050]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYNKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1137062 DQL28_RS00740 WP_046177419.1 111795..112190(+) (ssbA) [Streptococcus pyogenes strain NCTC12050]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCGGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCTGAAACCTTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACTCGC
AAGTATAATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

61.404

87.023

0.534
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405

Multiple sequence alignment