Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQL30_RS00855 Genome accession   NZ_LS483333
Coordinates   126644..127039 (+) Length   131 a.a.
NCBI ID   WP_003053955.1    Uniprot ID   A0AAE9R0G1
Organism   Streptococcus pyogenes strain NCTC12048     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 121644..132039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL30_RS00820 (NCTC12048_00165) pepA 122444..123511 (-) 1068 WP_110002895.1 glutamyl aminopeptidase -
  DQL30_RS00835 (NCTC12048_00166) - 124007..125140 (-) 1134 WP_111713565.1 ISAs1-like element IS1548 family transposase -
  DQL30_RS00840 (NCTC12048_00167) - 125250..125534 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  DQL30_RS00845 (NCTC12048_00168) - 125531..125848 (+) 318 WP_002992751.1 thioredoxin family protein -
  DQL30_RS00850 (NCTC12048_00169) ytpR 125866..126492 (+) 627 WP_030126924.1 YtpR family tRNA-binding protein -
  DQL30_RS00855 (NCTC12048_00170) ssbA 126644..127039 (+) 396 WP_003053955.1 single-stranded DNA-binding protein Machinery gene
  DQL30_RS00860 (NCTC12048_00171) - 127299..127940 (-) 642 WP_002986504.1 deoxynucleoside kinase -
  DQL30_RS00865 (NCTC12048_00172) dusB 127960..128937 (-) 978 WP_111713566.1 tRNA dihydrouridine synthase DusB -
  DQL30_RS00870 (NCTC12048_00173) hslO 128924..129796 (-) 873 WP_111713567.1 Hsp33 family molecular chaperone HslO -
  DQL30_RS00875 (NCTC12048_00174) rofA 129938..131431 (-) 1494 WP_111713568.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14787.96 Da        Isoelectric Point: 8.0157

>NTDB_id=1137008 DQL30_RS00855 WP_003053955.1 126644..127039(+) (ssbA) [Streptococcus pyogenes strain NCTC12048]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1137008 DQL30_RS00855 WP_003053955.1 126644..127039(+) (ssbA) [Streptococcus pyogenes strain NCTC12048]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCTGATTTTATTTCAGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment