Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQL47_RS09655 Genome accession   NZ_LS483328
Coordinates   2018587..2018982 (-) Length   131 a.a.
NCBI ID   WP_111690486.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC12090     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2013587..2023982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL47_RS09635 (NCTC12090_01951) - 2014371..2015174 (-) 804 WP_043039509.1 ABC transporter ATP-binding protein -
  DQL47_RS09640 (NCTC12090_01952) - 2015183..2016067 (-) 885 WP_043053486.1 ABC transporter permease -
  DQL47_RS09645 (NCTC12090_01953) - 2016182..2017144 (-) 963 WP_043053487.1 ABC transporter substrate-binding protein -
  DQL47_RS09650 (NCTC12090_01954) - 2017162..2018136 (-) 975 WP_043053488.1 ABC transporter substrate-binding protein -
  DQL47_RS09655 (NCTC12090_01955) ssbA 2018587..2018982 (-) 396 WP_111690486.1 single-stranded DNA-binding protein Machinery gene
  DQL47_RS09660 (NCTC12090_01956) - 2019094..2019796 (+) 703 Protein_1850 class I SAM-dependent methyltransferase -
  DQL47_RS09665 (NCTC12090_01957) ytpR 2020099..2020725 (-) 627 WP_111690487.1 YtpR family tRNA-binding protein -
  DQL47_RS09670 (NCTC12090_01958) - 2020740..2021057 (-) 318 WP_015898651.1 thioredoxin family protein -
  DQL47_RS09675 (NCTC12090_01959) - 2021054..2021338 (-) 285 WP_279232727.1 DUF4651 domain-containing protein -
  DQL47_RS09680 (NCTC12090_01960) pepA 2021746..2022813 (+) 1068 WP_111690488.1 glutamyl aminopeptidase -
  DQL47_RS09685 (NCTC12090_01961) proC 2022902..2023675 (+) 774 WP_111690489.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14696.86 Da        Isoelectric Point: 9.5261

>NTDB_id=1136770 DQL47_RS09655 WP_111690486.1 2018587..2018982(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
MYNKVILIGRLVAKPELNKTLTDKQVVRFTLAVNRRFKTTTGEREVDFINAVAWGGLAETLASYASKGSLLSLDGELRTR
KYDKAGQTHFVTEVLCHSFQLLESRAQRAIRENNAANDLIDLALGEEKLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1136770 DQL47_RS09655 WP_111690486.1 2018587..2018982(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
ATGTACAATAAAGTAATCTTGATAGGCCGTTTAGTGGCCAAGCCAGAATTAAACAAGACATTAACGGATAAGCAGGTCGT
TCGATTTACATTAGCAGTTAATCGTCGGTTTAAGACGACGACTGGTGAGCGTGAGGTGGATTTTATCAATGCTGTTGCTT
GGGGAGGTTTGGCTGAAACCTTGGCTTCCTATGCTAGTAAGGGGAGTCTGCTGTCACTTGATGGCGAGCTTCGCACACGA
AAATATGACAAGGCGGGTCAGACTCATTTTGTGACAGAGGTTTTGTGTCATTCTTTTCAATTGCTGGAAAGTCGAGCGCA
ACGAGCTATACGTGAAAACAACGCTGCTAATGATTTGATTGATTTGGCTTTAGGGGAGGAAAAGCTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae Rx1

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae D39

69.466

100

0.695
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB/cilA Streptococcus mitis NCTC 12261

68.702

100

0.687
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

44.444

89.313

0.397

Multiple sequence alignment