Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQL59_RS07335 Genome accession   NZ_LS483326
Coordinates   1455077..1455472 (-) Length   131 a.a.
NCBI ID   WP_003053955.1    Uniprot ID   A0AAE9R0G1
Organism   Streptococcus pyogenes strain NCTC12045     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1450077..1460472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL59_RS07310 (NCTC12045_01449) rofA 1450680..1452173 (+) 1494 WP_111681324.1 transcriptional regulator RofA -
  DQL59_RS07315 (NCTC12045_01450) hslO 1452320..1453192 (+) 873 WP_012766459.1 Hsp33 family molecular chaperone HslO -
  DQL59_RS07320 (NCTC12045_01451) dusB 1453179..1454156 (+) 978 WP_111681325.1 tRNA dihydrouridine synthase DusB -
  DQL59_RS07325 (NCTC12045_01452) - 1454176..1454817 (+) 642 WP_002986504.1 deoxynucleoside kinase -
  DQL59_RS07335 (NCTC12045_01453) ssbA 1455077..1455472 (-) 396 WP_003053955.1 single-stranded DNA-binding protein Machinery gene
  DQL59_RS07340 (NCTC12045_01454) ytpR 1455623..1456249 (-) 627 WP_111681327.1 YtpR family tRNA-binding protein -
  DQL59_RS07345 (NCTC12045_01455) - 1456267..1456584 (-) 318 WP_002986515.1 thioredoxin family protein -
  DQL59_RS07350 (NCTC12045_01456) - 1456581..1456865 (-) 285 WP_002992749.1 DUF4651 domain-containing protein -
  DQL59_RS07360 (NCTC12045_01457) pepA 1457330..1458397 (+) 1068 WP_023610097.1 glutamyl aminopeptidase -
  DQL59_RS07365 (NCTC12045_01458) proC 1458445..1459215 (+) 771 WP_002992745.1 pyrroline-5-carboxylate reductase -
  DQL59_RS07370 - 1459298..1459606 (-) 309 WP_041174321.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14787.96 Da        Isoelectric Point: 8.0157

>NTDB_id=1136642 DQL59_RS07335 WP_003053955.1 1455077..1455472(-) (ssbA) [Streptococcus pyogenes strain NCTC12045]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1136642 DQL59_RS07335 WP_003053955.1 1455077..1455472(-) (ssbA) [Streptococcus pyogenes strain NCTC12045]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTGGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCGGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCTGAAACCTTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGAACCCGC
AAGTATGATAAAGATGGACAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCCATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment