Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQL35_RS10055 Genome accession   NZ_LS483325
Coordinates   2073811..2074206 (-) Length   131 a.a.
NCBI ID   WP_111678712.1    Uniprot ID   A0AAX2LI80
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC7022     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2068811..2079206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL35_RS10035 (NCTC7022_02028) - 2069596..2070399 (-) 804 WP_012678666.1 ABC transporter ATP-binding protein -
  DQL35_RS10040 (NCTC7022_02029) - 2070408..2071292 (-) 885 WP_043026732.1 ABC transporter permease -
  DQL35_RS10045 (NCTC7022_02030) - 2071404..2072366 (-) 963 WP_043041201.1 ABC transporter substrate-binding protein -
  DQL35_RS10050 (NCTC7022_02031) - 2072393..2073358 (-) 966 WP_012678669.1 ABC transporter substrate-binding protein -
  DQL35_RS10055 (NCTC7022_02032) ssbA 2073811..2074206 (-) 396 WP_111678712.1 single-stranded DNA-binding protein Machinery gene
  DQL35_RS10065 (NCTC7022_02033) ytpR 2074794..2075420 (-) 627 WP_111678714.1 YtpR family tRNA-binding protein -
  DQL35_RS10070 (NCTC7022_02034) - 2075435..2075752 (-) 318 WP_111678716.1 thioredoxin family protein -
  DQL35_RS10075 (NCTC7022_02035) - 2075749..2076033 (-) 285 WP_037579431.1 DUF4651 domain-containing protein -
  DQL35_RS10080 (NCTC7022_02036) pepA 2076438..2077505 (+) 1068 WP_111678718.1 glutamyl aminopeptidase -
  DQL35_RS10085 (NCTC7022_02037) proC 2077589..2078362 (+) 774 WP_043031581.1 pyrroline-5-carboxylate reductase -
  DQL35_RS10090 (NCTC7022_02038) - 2078598..2079035 (-) 438 WP_111678720.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14730.93 Da        Isoelectric Point: 7.8528

>NTDB_id=1136599 DQL35_RS10055 WP_111678712.1 2073811..2074206(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
MYNKVILIGRLVAKPELTKTLTDKQVVRFTLAVNRRFKTTTGECEVDFINVVAWGGLAETLASYASKGSLLSLDGELRTR
KYDKAGQTHFVTEVLCHSFQLLESRAQRAIRENNAANDLIDLALEEEKLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1136599 DQL35_RS10055 WP_111678712.1 2073811..2074206(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
ATGTACAATAAAGTAATCTTGATAGGCCGTTTAGTGGCCAAGCCAGAATTAACCAAGACATTAACTGATAAGCAGGTCGT
TCGATTTACCTTAGCAGTTAATCGTCGGTTTAAGACGACGACTGGTGAGTGTGAGGTTGATTTTATCAATGTTGTTGCTT
GGGGAGGCTTGGCTGAAACCTTGGCTTCCTATGCTAGCAAGGGAAGCCTGCTGTCACTTGATGGCGAGCTTCGCACACGA
AAATATGACAAGGCAGGTCAGACTCATTTTGTGACAGAGGTTTTGTGTCATTCTTTTCAATTGCTGGAAAGTCGAGCGCA
ACGAGCTATACGTGAAAACAACGCTGCTAATGATTTGATTGATTTGGCTTTAGAGGAGGAAAAGCTTCCCTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae Rx1

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae D39

69.466

100

0.695
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB/cilA Streptococcus mitis NCTC 12261

68.702

100

0.687
  ssbB Lactococcus lactis subsp. cremoris KW2

58.929

85.496

0.504
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

43.59

89.313

0.389

Multiple sequence alignment