Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQL05_RS00740 Genome accession   NZ_LS483322
Coordinates   112164..112559 (+) Length   131 a.a.
NCBI ID   WP_011284430.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12066     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107164..117559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL05_RS00705 - 108029..108337 (+) 309 WP_032467031.1 hypothetical protein -
  DQL05_RS00710 (NCTC12066_00142) proC 108420..109190 (-) 771 WP_002992745.1 pyrroline-5-carboxylate reductase -
  DQL05_RS00715 (NCTC12066_00143) pepA 109238..110305 (-) 1068 WP_109821057.1 glutamyl aminopeptidase -
  DQL05_RS00725 (NCTC12066_00144) - 110770..111054 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  DQL05_RS00730 (NCTC12066_00145) - 111051..111368 (+) 318 WP_002986515.1 thioredoxin family protein -
  DQL05_RS00735 (NCTC12066_00146) ytpR 111386..112012 (+) 627 WP_030126924.1 YtpR family tRNA-binding protein -
  DQL05_RS00740 (NCTC12066_00147) ssbA 112164..112559 (+) 396 WP_011284430.1 single-stranded DNA-binding protein Machinery gene
  DQL05_RS00745 (NCTC12066_00148) - 112819..113460 (-) 642 WP_030126925.1 deoxynucleoside kinase -
  DQL05_RS00750 (NCTC12066_00149) dusB 113480..114457 (-) 978 WP_021299420.1 tRNA dihydrouridine synthase DusB -
  DQL05_RS00755 (NCTC12066_00150) hslO 114444..115316 (-) 873 WP_030126926.1 Hsp33 family molecular chaperone HslO -
  DQL05_RS00760 (NCTC12066_00151) nra 115442..116977 (-) 1536 WP_030126927.1 transcriptional regulator Nra -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14801.98 Da        Isoelectric Point: 8.0157

>NTDB_id=1136403 DQL05_RS00740 WP_011284430.1 112164..112559(+) (ssbA) [Streptococcus pyogenes strain NCTC12066]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISIVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1136403 DQL05_RS00740 WP_011284430.1 112164..112559(+) (ssbA) [Streptococcus pyogenes strain NCTC12066]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACCGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCGGGAGAGCGAGAAGCGGATTTTATTTCAATTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

73.282

100

0.733
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

63.158

87.023

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment