Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQL11_RS00750 Genome accession   NZ_LS483315
Coordinates   113212..113607 (+) Length   131 a.a.
NCBI ID   WP_111704487.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12059     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 108212..118607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL11_RS00715 - 109077..109385 (+) 309 WP_011017251.1 hypothetical protein -
  DQL11_RS00720 (NCTC12059_00144) proC 109468..110238 (-) 771 WP_111704486.1 pyrroline-5-carboxylate reductase -
  DQL11_RS00725 (NCTC12059_00145) pepA 110286..111353 (-) 1068 WP_011184093.1 glutamyl aminopeptidase -
  DQL11_RS00735 (NCTC12059_00146) - 111818..112102 (+) 285 WP_014635230.1 DUF4651 domain-containing protein -
  DQL11_RS00740 (NCTC12059_00147) - 112099..112416 (+) 318 WP_002986515.1 thioredoxin family protein -
  DQL11_RS00745 (NCTC12059_00148) ytpR 112434..113060 (+) 627 WP_030126456.1 YtpR family tRNA-binding protein -
  DQL11_RS00750 (NCTC12059_00149) ssbA 113212..113607 (+) 396 WP_111704487.1 single-stranded DNA-binding protein Machinery gene
  DQL11_RS00760 (NCTC12059_00150) - 113866..114507 (-) 642 WP_111704489.1 deoxynucleoside kinase -
  DQL11_RS00765 (NCTC12059_00151) dusB 114527..115504 (-) 978 WP_111704490.1 tRNA dihydrouridine synthase DusB -
  DQL11_RS00770 (NCTC12059_00152) hslO 115491..116363 (-) 873 WP_111704491.1 Hsp33 family molecular chaperone HslO -
  DQL11_RS00775 (NCTC12059_00153) rofA 116510..118003 (-) 1494 WP_111704492.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14817.98 Da        Isoelectric Point: 8.0157

>NTDB_id=1136046 DQL11_RS00750 WP_111704487.1 113212..113607(+) (ssbA) [Streptococcus pyogenes strain NCTC12059]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRTQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1136046 DQL11_RS00750 WP_111704487.1 113212..113607(+) (ssbA) [Streptococcus pyogenes strain NCTC12059]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCGGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCTGAAACCTTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTACTCA
GCGTGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

73.282

100

0.733
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae D39

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae R6

69.466

100

0.695
  ssbB/cilA Streptococcus mitis NCTC 12261

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae TIGR4

69.466

100

0.695
  ssbB/cilA Streptococcus mitis SK321

68.702

100

0.687
  ssbB Lactococcus lactis subsp. cremoris KW2

61.404

87.023

0.534
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.598

81.679

0.397

Multiple sequence alignment