Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | DQL63_RS06655 | Genome accession | NZ_LS483312 |
| Coordinates | 1378475..1378789 (+) | Length | 104 a.a. |
| NCBI ID | WP_002459016.1 | Uniprot ID | - |
| Organism | Staphylococcus lugdunensis strain NCTC7990 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1373475..1383789
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL63_RS06625 (NCTC7990_01348) | - | 1374267..1374470 (+) | 204 | WP_002459010.1 | YqgQ family protein | - |
| DQL63_RS06630 (NCTC7990_01349) | - | 1374467..1375453 (+) | 987 | WP_002459011.1 | ROK family glucokinase | - |
| DQL63_RS06635 (NCTC7990_01350) | - | 1375453..1375776 (+) | 324 | WP_002459012.1 | MTH1187 family thiamine-binding protein | - |
| DQL63_RS06640 (NCTC7990_01351) | - | 1375780..1376403 (+) | 624 | WP_002459013.1 | MBL fold metallo-hydrolase | - |
| DQL63_RS06645 (NCTC7990_01352) | comGA | 1376450..1377424 (+) | 975 | WP_002478129.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DQL63_RS06650 (NCTC7990_01353) | comGB | 1377396..1378460 (+) | 1065 | WP_002459015.1 | competence type IV pilus assembly protein ComGB | - |
| DQL63_RS06655 (NCTC7990_01354) | comGC | 1378475..1378789 (+) | 315 | WP_002459016.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DQL63_RS06660 | comGD | 1378722..1379216 (+) | 495 | WP_002459017.1 | competence type IV pilus minor pilin ComGD | - |
| DQL63_RS06665 (NCTC7990_01355) | - | 1379203..1379496 (+) | 294 | WP_002459018.1 | hypothetical protein | - |
| DQL63_RS06670 (NCTC7990_01356) | - | 1379558..1379917 (+) | 360 | WP_002459019.1 | competence type IV pilus minor pilin ComGF | - |
| DQL63_RS06680 | - | 1380071..1380589 (+) | 519 | WP_002459021.1 | shikimate kinase | - |
| DQL63_RS06685 (NCTC7990_01359) | gcvT | 1380759..1381850 (+) | 1092 | WP_002459022.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| DQL63_RS06690 (NCTC7990_01360) | gcvPA | 1381867..1383216 (+) | 1350 | WP_002459023.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11373.37 Da Isoelectric Point: 8.2727
>NTDB_id=1135950 DQL63_RS06655 WP_002459016.1 1378475..1378789(+) (comGC) [Staphylococcus lugdunensis strain NCTC7990]
MKFSFYKKCKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHVQSTGCEAQVKMVNSQIEAYTLKHNGSPKSIDDLISEGF
IKDGQKNCKSGETISISNGEAVAN
MKFSFYKKCKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHVQSTGCEAQVKMVNSQIEAYTLKHNGSPKSIDDLISEGF
IKDGQKNCKSGETISISNGEAVAN
Nucleotide
Download Length: 315 bp
>NTDB_id=1135950 DQL63_RS06655 WP_002459016.1 1378475..1378789(+) (comGC) [Staphylococcus lugdunensis strain NCTC7990]
ATGAAATTTTCTTTTTATAAAAAATGCAAAGCGTTTACACTAATAGAAATGTTATTAGTATTACTAATTATTAGTGTCTT
GCTTATCTTAATTATTCCAAACATTGCCAAACAAACAGCACATGTACAATCAACAGGTTGTGAAGCACAAGTAAAGATGG
TCAATAGCCAAATAGAAGCCTATACTCTAAAGCATAATGGATCTCCAAAAAGCATTGATGATTTAATTTCTGAGGGTTTT
ATTAAAGATGGTCAAAAGAATTGCAAATCTGGGGAAACAATCAGCATATCAAATGGTGAGGCAGTTGCAAATTAA
ATGAAATTTTCTTTTTATAAAAAATGCAAAGCGTTTACACTAATAGAAATGTTATTAGTATTACTAATTATTAGTGTCTT
GCTTATCTTAATTATTCCAAACATTGCCAAACAAACAGCACATGTACAATCAACAGGTTGTGAAGCACAAGTAAAGATGG
TCAATAGCCAAATAGAAGCCTATACTCTAAAGCATAATGGATCTCCAAAAAGCATTGATGATTTAATTTCTGAGGGTTTT
ATTAAAGATGGTCAAAAGAATTGCAAATCTGGGGAAACAATCAGCATATCAAATGGTGAGGCAGTTGCAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
82.353 |
98.077 |
0.808 |
| comGC | Staphylococcus aureus N315 |
82.353 |
98.077 |
0.808 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
45.918 |
94.231 |
0.433 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.554 |
97.115 |
0.433 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
46.154 |
87.5 |
0.404 |
| comGC/cglC | Streptococcus pneumoniae R6 |
48.235 |
81.731 |
0.394 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
48.235 |
81.731 |
0.394 |
| comGC/cglC | Streptococcus pneumoniae D39 |
48.235 |
81.731 |
0.394 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
50.633 |
75.962 |
0.385 |
| comGC/cglC | Streptococcus mitis SK321 |
51.282 |
75 |
0.385 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
51.282 |
75 |
0.385 |
| comYC | Streptococcus mutans UA140 |
48.75 |
76.923 |
0.375 |
| comYC | Streptococcus mutans UA159 |
48.75 |
76.923 |
0.375 |