Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | DQL63_RS06645 | Genome accession | NZ_LS483312 |
| Coordinates | 1376450..1377424 (+) | Length | 324 a.a. |
| NCBI ID | WP_002478129.1 | Uniprot ID | - |
| Organism | Staphylococcus lugdunensis strain NCTC7990 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1371450..1382424
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL63_RS06610 (NCTC7990_01345) | rpmG | 1371874..1372023 (+) | 150 | WP_001830957.1 | 50S ribosomal protein L33 | - |
| DQL63_RS06615 (NCTC7990_01346) | - | 1372273..1372809 (+) | 537 | WP_002459008.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| DQL63_RS06620 (NCTC7990_01347) | - | 1372826..1374283 (+) | 1458 | WP_037542911.1 | rhomboid family protein | - |
| DQL63_RS06625 (NCTC7990_01348) | - | 1374267..1374470 (+) | 204 | WP_002459010.1 | YqgQ family protein | - |
| DQL63_RS06630 (NCTC7990_01349) | - | 1374467..1375453 (+) | 987 | WP_002459011.1 | ROK family glucokinase | - |
| DQL63_RS06635 (NCTC7990_01350) | - | 1375453..1375776 (+) | 324 | WP_002459012.1 | MTH1187 family thiamine-binding protein | - |
| DQL63_RS06640 (NCTC7990_01351) | - | 1375780..1376403 (+) | 624 | WP_002459013.1 | MBL fold metallo-hydrolase | - |
| DQL63_RS06645 (NCTC7990_01352) | comGA | 1376450..1377424 (+) | 975 | WP_002478129.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DQL63_RS06650 (NCTC7990_01353) | comGB | 1377396..1378460 (+) | 1065 | WP_002459015.1 | competence type IV pilus assembly protein ComGB | - |
| DQL63_RS06655 (NCTC7990_01354) | comGC | 1378475..1378789 (+) | 315 | WP_002459016.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DQL63_RS06660 | comGD | 1378722..1379216 (+) | 495 | WP_002459017.1 | competence type IV pilus minor pilin ComGD | - |
| DQL63_RS06665 (NCTC7990_01355) | - | 1379203..1379496 (+) | 294 | WP_002459018.1 | hypothetical protein | - |
| DQL63_RS06670 (NCTC7990_01356) | - | 1379558..1379917 (+) | 360 | WP_002459019.1 | competence type IV pilus minor pilin ComGF | - |
| DQL63_RS06680 | - | 1380071..1380589 (+) | 519 | WP_002459021.1 | shikimate kinase | - |
| DQL63_RS06685 (NCTC7990_01359) | gcvT | 1380759..1381850 (+) | 1092 | WP_002459022.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36932.76 Da Isoelectric Point: 7.8896
>NTDB_id=1135949 DQL63_RS06645 WP_002478129.1 1376450..1377424(+) (comGA) [Staphylococcus lugdunensis strain NCTC7990]
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVDYEELNLSIYTKLLTFMKFQAGLDVSTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRDASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVDYEELNLSIYTKLLTFMKFQAGLDVSTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRDASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=1135949 DQL63_RS06645 WP_002478129.1 1376450..1377424(+) (comGA) [Staphylococcus lugdunensis strain NCTC7990]
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTAGATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATGTATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAGTTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAGATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTAGATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATGTATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAGTTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAGATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
71.207 |
99.691 |
0.71 |
| comGA | Staphylococcus aureus N315 |
71.207 |
99.691 |
0.71 |