Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQL85_RS10385 Genome accession   NZ_LS483308
Coordinates   2017516..2017944 (-) Length   142 a.a.
NCBI ID   WP_072362190.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC13137     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2012516..2022944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL85_RS10330 (NCTC13137_01929) - 2012792..2013196 (-) 405 WP_111743879.1 hypothetical protein -
  DQL85_RS10335 (NCTC13137_01930) - 2013211..2013459 (-) 249 WP_072716750.1 SAV1978 family virulence-associated passenger protein -
  DQL85_RS10340 (NCTC13137_01931) - 2013459..2013713 (-) 255 WP_000022736.1 DUF3310 domain-containing protein -
  DQL85_RS10345 (NCTC13137_01932) - 2013713..2014222 (-) 510 WP_047432426.1 SA1788 family PVL leukocidin-associated protein -
  DQL85_RS10350 (NCTC13137_01933) - 2014223..2014408 (-) 186 WP_031873777.1 DUF3113 family protein -
  DQL85_RS10355 (NCTC13137_01934) - 2014413..2014817 (-) 405 WP_000049798.1 DUF1064 domain-containing protein -
  DQL85_RS10360 (NCTC13137_01935) - 2014827..2015048 (-) 222 WP_001123695.1 DUF3269 family protein -
  DQL85_RS10365 (NCTC13137_01936) - 2015061..2015219 (-) 159 WP_111743880.1 hypothetical protein -
  DQL85_RS10370 (NCTC13137_01937) - 2015216..2016001 (-) 786 WP_024273306.1 ATP-binding protein -
  DQL85_RS10375 (NCTC13137_01938) - 2016014..2016835 (-) 822 WP_024273305.1 phage replisome organizer N-terminal domain-containing protein -
  DQL85_RS10380 (NCTC13137_01939) - 2016807..2017502 (-) 696 WP_111743881.1 putative HNHc nuclease -
  DQL85_RS10385 (NCTC13137_01940) ssbA 2017516..2017944 (-) 429 WP_072362190.1 single-stranded DNA-binding protein Machinery gene
  DQL85_RS10390 (NCTC13137_01941) - 2017944..2018567 (-) 624 WP_000139720.1 DUF1071 domain-containing protein -
  DQL85_RS10395 (NCTC13137_01942) - 2018560..2018781 (-) 222 WP_000815402.1 DUF2483 family protein -
  DQL85_RS10400 (NCTC13137_01943) - 2018791..2019051 (-) 261 WP_000291510.1 DUF1108 family protein -
  DQL85_RS10405 (NCTC13137_01944) - 2019144..2019305 (-) 162 WP_000066020.1 DUF1270 domain-containing protein -
  DQL85_RS10410 (NCTC13137_01945) - 2019302..2019622 (-) 321 WP_070958040.1 DUF771 domain-containing protein -
  DQL85_RS14445 - 2019771..2019870 (-) 100 Protein_1933 hypothetical protein -
  DQL85_RS10420 (NCTC13137_01947) - 2019886..2020638 (-) 753 WP_001148605.1 phage antirepressor KilAC domain-containing protein -
  DQL85_RS10425 (NCTC13137_01948) - 2020689..2021024 (+) 336 WP_070958043.1 hypothetical protein -
  DQL85_RS10430 (NCTC13137_01949) - 2021013..2021227 (-) 215 Protein_1936 Thoeris anti-defense Tad2 family protein -
  DQL85_RS10435 (NCTC13137_01950) - 2021243..2021506 (-) 264 WP_000854072.1 helix-turn-helix transcriptional regulator -
  DQL85_RS10440 - 2021503..2021677 (-) 175 Protein_1938 transcriptional regulator -
  DQL85_RS10445 (NCTC13137_01951) - 2021640..2022353 (+) 714 WP_001031454.1 XRE family transcriptional regulator -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15858.56 Da        Isoelectric Point: 8.4825

>NTDB_id=1135840 DQL85_RS10385 WP_072362190.1 2017516..2017944(-) (ssbA) [Staphylococcus aureus strain NCTC13137]
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYDNKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1135840 DQL85_RS10385 WP_072362190.1 2017516..2017944(-) (ssbA) [Staphylococcus aureus strain NCTC13137]
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGGTCACTGGCAGGTGTTGACGGACGATTACAAACACGT
AGCTACGATAACAAAGTCGGGCAACGTGTATTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.697
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

74.648

0.43
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.259

100

0.415
  ssbA Streptococcus mutans UA159

40.141

100

0.401
  ssbB/cilA Streptococcus mitis NCTC 12261

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae Rx1

38.732

100

0.387
  ssbB/cilA Streptococcus pneumoniae D39

38.732

100

0.387
  ssbB/cilA Streptococcus pneumoniae R6

38.732

100

0.387
  ssbB/cilA Streptococcus mitis SK321

38.732

100

0.387

Multiple sequence alignment