Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQM39_RS00865 Genome accession   NZ_LS483298
Coordinates   128160..128555 (+) Length   131 a.a.
NCBI ID   WP_002986508.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8225     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 123160..133555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM39_RS00830 (NCTC8225_00167) proC 123330..124100 (-) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -
  DQM39_RS00835 (NCTC8225_00168) pepA 124148..125215 (-) 1068 WP_002986524.1 glutamyl aminopeptidase -
  DQM39_RS00845 (NCTC8225_00169) - 125751..126752 (+) 1002 WP_011184094.1 IS30-like element IS1239 family transposase -
  DQM39_RS00850 (NCTC8225_00170) - 126766..127050 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  DQM39_RS00855 (NCTC8225_00171) - 127047..127364 (+) 318 WP_002986515.1 thioredoxin family protein -
  DQM39_RS00860 (NCTC8225_00172) ytpR 127382..128008 (+) 627 WP_002986511.1 YtpR family tRNA-binding protein -
  DQM39_RS00865 (NCTC8225_00173) ssbA 128160..128555 (+) 396 WP_002986508.1 single-stranded DNA-binding protein Machinery gene
  DQM39_RS00875 (NCTC8225_00174) - 128815..129456 (-) 642 WP_111680746.1 deoxynucleoside kinase -
  DQM39_RS00880 (NCTC8225_00175) dusB 129476..130453 (-) 978 WP_002986502.1 tRNA dihydrouridine synthase DusB -
  DQM39_RS00885 (NCTC8225_00176) hslO 130440..131312 (-) 873 WP_002986499.1 Hsp33 family molecular chaperone HslO -
  DQM39_RS00890 (NCTC8225_00177) rofA 131459..132952 (-) 1494 WP_111680747.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14773.93 Da        Isoelectric Point: 8.0157

>NTDB_id=1135450 DQM39_RS00865 WP_002986508.1 128160..128555(+) (ssbA) [Streptococcus pyogenes strain NCTC8225]
MYNKVVAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1135450 DQM39_RS00865 WP_002986508.1 128160..128555(+) (ssbA) [Streptococcus pyogenes strain NCTC8225]
ATGTATAATAAAGTGGTAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCGGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCTGAAACCTTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGTGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

73.282

100

0.733
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae D39

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae R6

69.466

100

0.695
  ssbB/cilA Streptococcus mitis NCTC 12261

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae TIGR4

69.466

100

0.695
  ssbB/cilA Streptococcus mitis SK321

68.702

100

0.687
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405

Multiple sequence alignment