Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MORIYA_RS15625 Genome accession   NZ_LS483250
Coordinates   3361763..3363019 (-) Length   418 a.a.
NCBI ID   WP_112716614.1    Uniprot ID   A0A330LST8
Organism   Moritella yayanosii strain DB21MT 5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3356763..3368019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MORIYA_RS21840 - 3359273..3359359 (+) 87 Protein_3008 SEC-C metal-binding domain-containing protein -
  MORIYA_RS15605 (MORIYA_3290) mutT 3359508..3359900 (+) 393 WP_112716606.1 8-oxo-dGTP diphosphatase MutT -
  MORIYA_RS15610 (MORIYA_3291) yacG 3359932..3360123 (-) 192 WP_232011740.1 DNA gyrase inhibitor YacG -
  MORIYA_RS15615 (MORIYA_3292) coaE 3360152..3360757 (-) 606 WP_112716610.1 dephospho-CoA kinase -
  MORIYA_RS15620 (MORIYA_3293) pilD 3360788..3361675 (-) 888 WP_112716612.1 A24 family peptidase Machinery gene
  MORIYA_RS15625 (MORIYA_3294) pilC 3361763..3363019 (-) 1257 WP_112716614.1 type II secretion system F family protein Machinery gene
  MORIYA_RS15630 (MORIYA_3295) pilB 3363096..3364799 (-) 1704 WP_112716616.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MORIYA_RS15635 (MORIYA_3296) - 3364806..3365246 (-) 441 WP_112716618.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MORIYA_RS15640 (MORIYA_3297) nadC 3365637..3366479 (-) 843 WP_112716620.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MORIYA_RS15645 (MORIYA_3298) - 3366504..3367010 (-) 507 WP_112716622.1 TIGR02281 family clan AA aspartic protease -
  MORIYA_RS15650 (MORIYA_3299) ampD 3367221..3367784 (+) 564 WP_112716624.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45863.32 Da        Isoelectric Point: 10.1820

>NTDB_id=1135269 MORIYA_RS15625 WP_112716614.1 3361763..3363019(-) (pilC) [Moritella yayanosii strain DB21MT 5]
MVAVTKTTHNRRKPSAVKKRYPYHWQGVNRKGKKVSGEMQAESISNLKVELRRQGINVLKAKRKSTGLFSVGSKKIKAMD
IALISRQISTMLNAGVPLVQSLEIIARSNDNPAMRSLIGEVAAEVSTGTSLSNTLRKHPIYFDDLYCDLISAGEQSGSLD
TMYDRIATYKEKAEALKSKIKKAMLYPAMVVAVATIVTLILLLYVIPQFKDIFAGFGAELPPFTLFVLSISDFVSQFWYL
VIGILFGIPIIYLKANQRSMKVKHITERTILKIPAIGPIMHKGALARFARTLSTTFAAGIPLVDSLTSAAGASGNIVYKN
AVMEMRNEVIAGLPMHIAMRSTNLFPDMVTQMVMIGEESGSLDDMLAKVAHIYEQQVDDAVDGLTSLIEPMIMVVLGVII
GGLVIAMYLPIFKMGSIM

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1135269 MORIYA_RS15625 WP_112716614.1 3361763..3363019(-) (pilC) [Moritella yayanosii strain DB21MT 5]
ATGGTCGCAGTAACCAAAACAACCCATAATCGTCGCAAACCATCAGCAGTAAAAAAACGCTATCCGTATCACTGGCAAGG
CGTTAACCGTAAAGGCAAAAAAGTCAGTGGTGAAATGCAAGCAGAAAGCATCAGTAACCTGAAGGTAGAACTTCGCCGTC
AGGGTATCAACGTTTTAAAAGCCAAGCGCAAATCAACAGGCTTGTTCTCTGTCGGTAGCAAAAAAATTAAAGCGATGGAC
ATTGCCCTCATATCACGACAGATTTCCACCATGCTGAATGCCGGTGTGCCCTTGGTGCAAAGTTTAGAAATTATAGCCCG
CAGTAATGACAACCCCGCCATGCGCTCGTTAATCGGCGAGGTGGCAGCAGAGGTGTCTACCGGTACATCGCTGTCTAATA
CCTTGCGCAAACATCCCATTTATTTTGATGATTTGTATTGTGATTTGATCAGCGCAGGCGAACAATCAGGTTCATTGGAC
ACTATGTATGATCGTATCGCCACCTATAAAGAAAAAGCCGAAGCACTCAAATCTAAGATTAAAAAAGCCATGCTTTACCC
GGCTATGGTAGTCGCCGTTGCGACTATCGTCACGCTTATTTTATTGCTGTATGTCATACCGCAGTTCAAAGACATCTTCG
CCGGTTTTGGCGCAGAACTGCCGCCTTTCACCTTGTTTGTGCTATCGATTTCTGATTTCGTCAGTCAATTTTGGTATTTG
GTGATTGGCATATTATTTGGAATACCGATTATTTACCTTAAAGCGAATCAACGTTCAATGAAAGTCAAACATATCACCGA
ACGCACTATCCTCAAGATCCCTGCAATTGGACCAATCATGCATAAAGGCGCGTTGGCACGTTTCGCCAGAACGCTATCCA
CCACATTTGCAGCCGGTATTCCCCTGGTAGACTCGCTAACCTCTGCGGCAGGCGCATCGGGCAATATTGTTTATAAAAAT
GCGGTAATGGAAATGCGTAATGAAGTGATCGCCGGATTACCAATGCACATCGCCATGCGCTCAACCAATTTATTCCCTGA
CATGGTGACGCAAATGGTGATGATCGGTGAAGAGTCTGGGTCACTCGATGATATGTTAGCCAAAGTTGCGCATATTTATG
AGCAACAAGTTGATGATGCCGTCGATGGCTTAACCAGTTTAATCGAACCGATGATCATGGTGGTACTGGGTGTCATCATT
GGCGGTCTGGTGATTGCGATGTATTTACCTATCTTTAAAATGGGTAGCATCATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A330LST8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.25

95.694

0.529
  pilC Acinetobacter baumannii D1279779

50.376

95.455

0.481
  pilC Legionella pneumophila strain ERS1305867

51.015

94.258

0.481
  pilC Acinetobacter baylyi ADP1

50.126

94.976

0.476
  pilC Vibrio campbellii strain DS40M4

45.34

94.976

0.431
  pilC Vibrio cholerae strain A1552

45.226

95.215

0.431
  pilG Neisseria gonorrhoeae MS11

44.169

96.411

0.426
  pilG Neisseria meningitidis 44/76-A

43.921

96.411

0.423

Multiple sequence alignment