Detailed information NTG1135268

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MORIYA_RS15620
• Genome accession: NZ_LS483250
• Coordinates: 3360788..3361675 (-)
• Length: 295 a.a.
• NCBI ID: WP_112716612.1
• Uniprot ID: -
• Organism: Moritella yayanosii strain DB21MT 5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3355788..3366675

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MORIYA_RS15600 (MORIYA_3289)	secA	3356642..3359180 (+)	2539	Protein_3007	preprotein translocase subunit SecA	-
MORIYA_RS21840	-	3359273..3359359 (+)	87	Protein_3008	SEC-C metal-binding domain-containing protein	-
MORIYA_RS15605 (MORIYA_3290)	mutT	3359508..3359900 (+)	393	WP_112716606.1	8-oxo-dGTP diphosphatase MutT	-
MORIYA_RS15610 (MORIYA_3291)	yacG	3359932..3360123 (-)	192	WP_232011740.1	DNA gyrase inhibitor YacG	-
MORIYA_RS15615 (MORIYA_3292)	coaE	3360152..3360757 (-)	606	WP_112716610.1	dephospho-CoA kinase	-
MORIYA_RS15620 (MORIYA_3293)	pilD	3360788..3361675 (-)	888	WP_112716612.1	A24 family peptidase	Machinery gene
MORIYA_RS15625 (MORIYA_3294)	pilC	3361763..3363019 (-)	1257	WP_112716614.1	type II secretion system F family protein	Machinery gene
MORIYA_RS15630 (MORIYA_3295)	pilB	3363096..3364799 (-)	1704	WP_112716616.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MORIYA_RS15635 (MORIYA_3296)	-	3364806..3365246 (-)	441	WP_112716618.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
MORIYA_RS15640 (MORIYA_3297)	nadC	3365637..3366479 (-)	843	WP_112716620.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 295 a.a.
• Molecular weight: 32923.14 Da
• Isoelectric Point: 6.4401

>NTDB_id=1135268 MORIYA_RS15620 WP_112716612.1 3360788..3361675(-) (pilD) [Moritella yayanosii strain DB21MT 5]
MQDLALLFQLTPWLLWLSVALLGLLVGSFLNVVIYRLPIMMEREWKQECTVYFSDKCKTAETGPETTKFNLLLPRSACPK
CDHQITALENIPVISWLVLRGKCSNCANPISARYPSIELLTGLLSLVVAVYIPYGIQLAGALILTWTLVALTFIDIDKML
LPDQMTLPLLWLGLFINVNYAWVTPSDAIIGAIVGYLSLWSVYWGFKLLTGKEGMGYGDFKLLAAFGAWFGWQSILAIVL
LSSFAGAIIGITQIALKKHTQGNPIPFGPYLAIAGWLYLIWGDQLVDFYLVNFVY

Nucleotide

• Length: 888 bp

>NTDB_id=1135268 MORIYA_RS15620 WP_112716612.1 3360788..3361675(-) (pilD) [Moritella yayanosii strain DB21MT 5]
ATGCAAGACTTAGCGCTTCTTTTTCAACTCACCCCTTGGCTATTATGGTTATCAGTTGCCCTTCTCGGTCTGTTAGTGGG
CAGTTTCTTAAATGTGGTGATTTACCGCTTACCCATCATGATGGAGCGCGAGTGGAAACAAGAGTGCACGGTTTATTTTA
GTGATAAATGCAAAACCGCTGAAACAGGACCTGAAACCACTAAATTTAACTTATTGTTACCCCGCTCTGCTTGCCCTAAG
TGTGATCATCAAATTACGGCATTAGAAAATATCCCGGTGATCAGCTGGCTAGTATTAAGGGGGAAATGTAGCAATTGTGC
CAATCCTATTTCAGCACGTTATCCAAGCATTGAGCTATTAACCGGGTTATTATCACTCGTGGTCGCCGTGTATATCCCGT
ACGGCATTCAATTAGCTGGGGCACTCATCTTAACCTGGACCTTAGTCGCACTGACCTTTATCGACATTGATAAAATGTTA
TTACCCGATCAAATGACGCTACCATTATTGTGGTTAGGTCTATTTATTAACGTTAATTATGCTTGGGTAACACCATCCGA
TGCCATCATCGGCGCTATCGTTGGTTACTTATCACTGTGGTCTGTGTATTGGGGGTTCAAATTACTCACCGGCAAAGAAG
GCATGGGTTATGGGGATTTCAAACTCTTAGCTGCGTTTGGTGCTTGGTTCGGCTGGCAATCAATTTTAGCCATTGTGCTG
TTATCTTCTTTTGCTGGCGCAATTATTGGTATTACCCAAATCGCATTAAAAAAACATACTCAAGGCAACCCTATTCCATT
TGGTCCTTATCTGGCCATCGCAGGCTGGTTGTACCTTATCTGGGGCGATCAATTAGTTGATTTTTATTTAGTTAACTTTG
TTTATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (142-251)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-130)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.401	97.966	0.553
pilD	Vibrio campbellii strain DS40M4	53.979	97.966	0.529
pilD	Acinetobacter baumannii D1279779	53.103	98.305	0.522
pilD	Acinetobacter nosocomialis M2	53.103	98.305	0.522
pilD	Neisseria gonorrhoeae MS11	47.018	96.61	0.454