Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACLQZX_RS16625 Genome accession   NZ_LR962898
Coordinates   3833326..3834483 (+) Length   385 a.a.
NCBI ID   WP_386051418.1    Uniprot ID   -
Organism   Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1514     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3829134..3846087 3833326..3834483 within 0


Gene organization within MGE regions


Location: 3829134..3846087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQZX_RS16605 (X12_003301) - 3829134..3829871 (+) 738 WP_244860030.1 zeta toxin family protein -
  ACLQZX_RS16610 (X12_003302) pilB 3830055..3831782 (-) 1728 WP_211914180.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACLQZX_RS16615 (X12_003303) - 3831929..3832390 (-) 462 WP_411757862.1 pilin -
  ACLQZX_RS16620 (X12_003304) comP 3832470..3832892 (-) 423 WP_211914181.1 pilin Machinery gene
  ACLQZX_RS16625 (X12_003305) pilC 3833326..3834483 (+) 1158 WP_386051418.1 type II secretion system F family protein Machinery gene
  ACLQZX_RS16630 (X12_003306) - 3834490..3835353 (+) 864 WP_002812278.1 prepilin peptidase -
  ACLQZX_RS16635 (X12_003307) coaE 3835367..3835978 (+) 612 WP_211914182.1 dephospho-CoA kinase -
  ACLQZX_RS16640 - 3836141..3840499 (+) 4359 WP_244860031.1 RHS repeat-associated core domain-containing protein -
  ACLQZX_RS16645 (X12_003309) - 3840502..3840960 (+) 459 WP_211914183.1 hypothetical protein -
  ACLQZX_RS16650 (X12_003310) - 3841359..3841760 (+) 402 WP_211914184.1 SymE family type I addiction module toxin -
  ACLQZX_RS16655 (X12_003311) - 3841905..3842210 (+) 306 WP_211914185.1 helix-turn-helix transcriptional regulator -
  ACLQZX_RS16660 (X12_003312) - 3842218..3843447 (+) 1230 WP_211914186.1 type II toxin-antitoxin system HipA family toxin -
  ACLQZX_RS16665 (X12_003313) - 3843581..3844915 (-) 1335 WP_211914187.1 sensor histidine kinase -
  ACLQZX_RS16670 (X12_003314) - 3844908..3845585 (-) 678 WP_006448355.1 response regulator transcription factor -
  ACLQZX_RS16675 (X12_003315) - 3845617..3846087 (-) 471 WP_244860033.1 hypothetical protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 41962.62 Da        Isoelectric Point: 9.9730

>NTDB_id=1134972 ACLQZX_RS16625 WP_386051418.1 3833326..3834483(+) (pilC) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1514]
MKGEQSARNMNLLRAELRRQGITPTVVKPKPKPLFGAAGKKVTAKDISFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRM
KQLVSQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLETVLDTVATYKENIEALKGKIKKALFYPAMVVAVA
LIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVAASRFTVSYWWLMLLIIGGSAAGFIFAYKRSPSMQHGMDRLLLKFP
VIGQIMHNSSIARFARTTAVTFKAGVPLVEGLGIVAGATGNKVYEEAVLRMRDDVSVGYPVNMAMKQVNIFPHMVIQMTA
IGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVGGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=1134972 ACLQZX_RS16625 WP_386051418.1 3833326..3834483(+) (pilC) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1514]
ATGAAAGGTGAACAATCCGCACGTAACATGAATTTGTTGCGCGCAGAACTTCGTCGACAAGGGATCACTCCTACTGTAGT
GAAACCTAAACCCAAGCCACTTTTTGGAGCTGCGGGTAAGAAAGTTACAGCTAAAGACATATCTTTCTTTAGTCGTCAGA
TGGCAACGATGATGAAGTCGGGCGTACCTATCGTAAGCTCATTGGAAATAATAGGCGAGGGACATAAAAACCCCCGCATG
AAACAGTTGGTTTCTCAAATACGAACCGATATCGAAGGCGGTTCATCACTCCACGAAGCCATAAGTAAGCACCCAGTTCA
ATTTGACGAACTTTACCGAAATCTTGTTCGTGCAGGCGAGGGAGCAGGCGTTCTTGAGACAGTGCTTGACACAGTCGCAA
CCTATAAAGAAAATATTGAGGCGTTAAAAGGAAAGATTAAAAAAGCTCTTTTCTATCCGGCCATGGTCGTTGCAGTGGCG
CTAATCGTCAGCGCAATCTTACTTATCTTTGTTGTGCCCCAGTTTGAAGAGGTGTTCAAAGGTTTTGGGGCGGAATTACC
TGCATTCACCCAAATGATCGTGGCCGCATCGCGCTTTACGGTCAGCTATTGGTGGCTCATGCTTTTAATTATTGGCGGCT
CCGCAGCAGGATTTATCTTTGCTTATAAGCGCTCCCCAAGCATGCAACACGGAATGGATCGCCTGCTCTTAAAATTCCCT
GTAATCGGCCAAATAATGCATAACAGTTCGATCGCCCGCTTTGCTCGCACGACTGCTGTTACTTTTAAAGCTGGCGTACC
CTTGGTTGAGGGGTTAGGCATAGTGGCGGGCGCGACCGGAAATAAAGTTTATGAGGAGGCCGTGCTACGCATGCGAGACG
ACGTATCTGTTGGCTACCCTGTGAACATGGCCATGAAACAGGTTAATATCTTCCCTCATATGGTAATTCAAATGACAGCA
ATCGGCGAAGAAGCTGGCGCACTTGATACCATGTTATTCAAAGTGGCAGAGTACTTCGAACAAGAAGTTAATAACGCCGT
GGATGCATTGAGCAGCCTGCTGGAACCATTGATTATGGTGTTCATCGGCACCATCGTAGGCGGCATGGTCATCGGCATGT
ATCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(254-376)

Type II secretion system (T2SS), protein F (T2SSF)

(50-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.385

99.74

0.532
  pilC Legionella pneumophila strain ERS1305867

53.125

99.74

0.53
  pilC Acinetobacter baylyi ADP1

51.688

100

0.517
  pilC Acinetobacter baumannii D1279779

51.688

100

0.517
  pilG Neisseria gonorrhoeae MS11

45.22

100

0.455
  pilG Neisseria meningitidis 44/76-A

44.703

100

0.449
  pilC Vibrio cholerae strain A1552

43.432

96.883

0.421
  pilC Vibrio campbellii strain DS40M4

41.176

97.143

0.4
  pilC Thermus thermophilus HB27

41.471

88.312

0.366

Multiple sequence alignment