Detailed information NTG1134972

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ACLQZX_RS16625
• Genome accession: NZ_LR962898
• Coordinates: 3833326..3834483 (+)
• Length: 385 a.a.
• NCBI ID: WP_386051418.1
• Uniprot ID: -
• Organism: Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1514
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3828326..3839483

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLQZX_RS16600 (X12_003300)	-	3828778..3829134 (+)	357	WP_211914179.1	hypothetical protein	-
ACLQZX_RS16605 (X12_003301)	-	3829134..3829871 (+)	738	WP_244860030.1	zeta toxin family protein	-
ACLQZX_RS16610 (X12_003302)	pilB	3830055..3831782 (-)	1728	WP_211914180.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACLQZX_RS16615 (X12_003303)	-	3831929..3832390 (-)	462	WP_411757862.1	pilin	-
ACLQZX_RS16620 (X12_003304)	comP	3832470..3832892 (-)	423	WP_211914181.1	pilin	Machinery gene
ACLQZX_RS16625 (X12_003305)	pilC	3833326..3834483 (+)	1158	WP_386051418.1	type II secretion system F family protein	Machinery gene
ACLQZX_RS16630 (X12_003306)	-	3834490..3835353 (+)	864	WP_002812278.1	prepilin peptidase	-
ACLQZX_RS16635 (X12_003307)	coaE	3835367..3835978 (+)	612	WP_211914182.1	dephospho-CoA kinase	-

Sequence

Protein

• Length: 385 a.a.
• Molecular weight: 41962.62 Da
• Isoelectric Point: 9.9730

>NTDB_id=1134972 ACLQZX_RS16625 WP_386051418.1 3833326..3834483(+) (pilC) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1514]
MKGEQSARNMNLLRAELRRQGITPTVVKPKPKPLFGAAGKKVTAKDISFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRM
KQLVSQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLETVLDTVATYKENIEALKGKIKKALFYPAMVVAVA
LIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVAASRFTVSYWWLMLLIIGGSAAGFIFAYKRSPSMQHGMDRLLLKFP
VIGQIMHNSSIARFARTTAVTFKAGVPLVEGLGIVAGATGNKVYEEAVLRMRDDVSVGYPVNMAMKQVNIFPHMVIQMTA
IGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVGGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1158 bp

>NTDB_id=1134972 ACLQZX_RS16625 WP_386051418.1 3833326..3834483(+) (pilC) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1514]
ATGAAAGGTGAACAATCCGCACGTAACATGAATTTGTTGCGCGCAGAACTTCGTCGACAAGGGATCACTCCTACTGTAGT
GAAACCTAAACCCAAGCCACTTTTTGGAGCTGCGGGTAAGAAAGTTACAGCTAAAGACATATCTTTCTTTAGTCGTCAGA
TGGCAACGATGATGAAGTCGGGCGTACCTATCGTAAGCTCATTGGAAATAATAGGCGAGGGACATAAAAACCCCCGCATG
AAACAGTTGGTTTCTCAAATACGAACCGATATCGAAGGCGGTTCATCACTCCACGAAGCCATAAGTAAGCACCCAGTTCA
ATTTGACGAACTTTACCGAAATCTTGTTCGTGCAGGCGAGGGAGCAGGCGTTCTTGAGACAGTGCTTGACACAGTCGCAA
CCTATAAAGAAAATATTGAGGCGTTAAAAGGAAAGATTAAAAAAGCTCTTTTCTATCCGGCCATGGTCGTTGCAGTGGCG
CTAATCGTCAGCGCAATCTTACTTATCTTTGTTGTGCCCCAGTTTGAAGAGGTGTTCAAAGGTTTTGGGGCGGAATTACC
TGCATTCACCCAAATGATCGTGGCCGCATCGCGCTTTACGGTCAGCTATTGGTGGCTCATGCTTTTAATTATTGGCGGCT
CCGCAGCAGGATTTATCTTTGCTTATAAGCGCTCCCCAAGCATGCAACACGGAATGGATCGCCTGCTCTTAAAATTCCCT
GTAATCGGCCAAATAATGCATAACAGTTCGATCGCCCGCTTTGCTCGCACGACTGCTGTTACTTTTAAAGCTGGCGTACC
CTTGGTTGAGGGGTTAGGCATAGTGGCGGGCGCGACCGGAAATAAAGTTTATGAGGAGGCCGTGCTACGCATGCGAGACG
ACGTATCTGTTGGCTACCCTGTGAACATGGCCATGAAACAGGTTAATATCTTCCCTCATATGGTAATTCAAATGACAGCA
ATCGGCGAAGAAGCTGGCGCACTTGATACCATGTTATTCAAAGTGGCAGAGTACTTCGAACAAGAAGTTAATAACGCCGT
GGATGCATTGAGCAGCCTGCTGGAACCATTGATTATGGTGTTCATCGGCACCATCGTAGGCGGCATGGTCATCGGCATGT
ATCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGTTAA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (254-376)

• Type II secretion system (T2SS), protein F (T2SSF) (50-173)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	53.385	99.74	0.532
pilC	Legionella pneumophila strain ERS1305867	53.125	99.74	0.53
pilC	Acinetobacter baylyi ADP1	51.688	100	0.517
pilC	Acinetobacter baumannii D1279779	51.688	100	0.517
pilG	Neisseria gonorrhoeae MS11	45.22	100	0.455
pilG	Neisseria meningitidis 44/76-A	44.703	100	0.449
pilC	Vibrio cholerae strain A1552	43.432	96.883	0.421
pilC	Vibrio campbellii strain DS40M4	41.176	97.143	0.4
pilC	Thermus thermophilus HB27	41.471	88.312	0.366