Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   ACLQZX_RS16620 Genome accession   NZ_LR962898
Coordinates   3832470..3832892 (-) Length   140 a.a.
NCBI ID   WP_211914181.1    Uniprot ID   -
Organism   Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1514     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3829134..3846087 3832470..3832892 within 0


Gene organization within MGE regions


Location: 3829134..3846087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQZX_RS16605 (X12_003301) - 3829134..3829871 (+) 738 WP_244860030.1 zeta toxin family protein -
  ACLQZX_RS16610 (X12_003302) pilB 3830055..3831782 (-) 1728 WP_211914180.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACLQZX_RS16615 (X12_003303) - 3831929..3832390 (-) 462 WP_411757862.1 pilin -
  ACLQZX_RS16620 (X12_003304) comP 3832470..3832892 (-) 423 WP_211914181.1 pilin Machinery gene
  ACLQZX_RS16625 (X12_003305) pilC 3833326..3834483 (+) 1158 WP_386051418.1 type II secretion system F family protein Machinery gene
  ACLQZX_RS16630 (X12_003306) - 3834490..3835353 (+) 864 WP_002812278.1 prepilin peptidase -
  ACLQZX_RS16635 (X12_003307) coaE 3835367..3835978 (+) 612 WP_211914182.1 dephospho-CoA kinase -
  ACLQZX_RS16640 - 3836141..3840499 (+) 4359 WP_244860031.1 RHS repeat-associated core domain-containing protein -
  ACLQZX_RS16645 (X12_003309) - 3840502..3840960 (+) 459 WP_211914183.1 hypothetical protein -
  ACLQZX_RS16650 (X12_003310) - 3841359..3841760 (+) 402 WP_211914184.1 SymE family type I addiction module toxin -
  ACLQZX_RS16655 (X12_003311) - 3841905..3842210 (+) 306 WP_211914185.1 helix-turn-helix transcriptional regulator -
  ACLQZX_RS16660 (X12_003312) - 3842218..3843447 (+) 1230 WP_211914186.1 type II toxin-antitoxin system HipA family toxin -
  ACLQZX_RS16665 (X12_003313) - 3843581..3844915 (-) 1335 WP_211914187.1 sensor histidine kinase -
  ACLQZX_RS16670 (X12_003314) - 3844908..3845585 (-) 678 WP_006448355.1 response regulator transcription factor -
  ACLQZX_RS16675 (X12_003315) - 3845617..3846087 (-) 471 WP_244860033.1 hypothetical protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 13876.99 Da        Isoelectric Point: 8.1053

>NTDB_id=1134971 ACLQZX_RS16620 WP_211914181.1 3832470..3832892(-) (comP) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1514]
MNKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRARVSEAAVLASGAKTTVAENIANNGGTIAAGACLGVDTTAPATT
NVASVTCGANTGAIAVVTTAKAGAVTLTFTPQPAAGIAGTKWTCVATGGKAAYYPAECRS

Nucleotide


Download         Length: 423 bp        

>NTDB_id=1134971 ACLQZX_RS16620 WP_211914181.1 3832470..3832892(-) (comP) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1514]
ATGAACAAGCAACAAGGCTTCACACTTATTGAATTAATGATTGTTGTGGCGATCATTGCCATTCTGGCGGCGATTGCTTT
GCCTGCATATCAAGACTATACAATTCGCGCACGCGTCTCTGAGGCTGCTGTGCTTGCTTCGGGTGCTAAAACTACAGTTG
CTGAGAACATTGCAAACAACGGCGGAACAATAGCTGCCGGCGCATGCCTTGGGGTTGATACTACTGCGCCAGCAACCACG
AATGTCGCTAGCGTTACCTGTGGCGCCAATACCGGTGCAATTGCAGTTGTCACGACCGCTAAGGCCGGTGCAGTTACCTT
GACCTTCACTCCGCAGCCTGCTGCCGGCATTGCTGGTACTAAGTGGACCTGTGTTGCGACTGGCGGTAAGGCAGCCTATT
ATCCGGCTGAATGCCGTAGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(36-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

52.349

100

0.557
  pilA Ralstonia pseudosolanacearum GMI1000

45.238

100

0.543
  pilA2 Legionella pneumophila str. Paris

54.676

99.286

0.543
  pilA2 Legionella pneumophila strain ERS1305867

53.957

99.286

0.536
  pilA/pilA1 Eikenella corrodens VA1

40.789

100

0.443
  pilA Vibrio parahaemolyticus RIMD 2210633

41.007

99.286

0.407
  pilA/pilAI Pseudomonas stutzeri DSM 10701

36.486

100

0.386

Multiple sequence alignment