Detailed information NTG1134970

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: ACLQZX_RS16610
• Genome accession: NZ_LR962898
• Coordinates: 3830055..3831782 (-)
• Length: 575 a.a.
• NCBI ID: WP_211914180.1
• Uniprot ID: -
• Organism: Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1514
• Function: power the assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3829134..3846087	3830055..3831782	within	0

Gene organization within MGE regions

Location: 3829134..3846087

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLQZX_RS16605 (X12_003301)	-	3829134..3829871 (+)	738	WP_244860030.1	zeta toxin family protein	-
ACLQZX_RS16610 (X12_003302)	pilB	3830055..3831782 (-)	1728	WP_211914180.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACLQZX_RS16615 (X12_003303)	-	3831929..3832390 (-)	462	WP_411757862.1	pilin	-
ACLQZX_RS16620 (X12_003304)	comP	3832470..3832892 (-)	423	WP_211914181.1	pilin	Machinery gene
ACLQZX_RS16625 (X12_003305)	pilC	3833326..3834483 (+)	1158	WP_386051418.1	type II secretion system F family protein	Machinery gene
ACLQZX_RS16630 (X12_003306)	-	3834490..3835353 (+)	864	WP_002812278.1	prepilin peptidase	-
ACLQZX_RS16635 (X12_003307)	coaE	3835367..3835978 (+)	612	WP_211914182.1	dephospho-CoA kinase	-
ACLQZX_RS16640	-	3836141..3840499 (+)	4359	WP_244860031.1	RHS repeat-associated core domain-containing protein	-
ACLQZX_RS16645 (X12_003309)	-	3840502..3840960 (+)	459	WP_211914183.1	hypothetical protein	-
ACLQZX_RS16650 (X12_003310)	-	3841359..3841760 (+)	402	WP_211914184.1	SymE family type I addiction module toxin	-
ACLQZX_RS16655 (X12_003311)	-	3841905..3842210 (+)	306	WP_211914185.1	helix-turn-helix transcriptional regulator	-
ACLQZX_RS16660 (X12_003312)	-	3842218..3843447 (+)	1230	WP_211914186.1	type II toxin-antitoxin system HipA family toxin	-
ACLQZX_RS16665 (X12_003313)	-	3843581..3844915 (-)	1335	WP_211914187.1	sensor histidine kinase	-
ACLQZX_RS16670 (X12_003314)	-	3844908..3845585 (-)	678	WP_006448355.1	response regulator transcription factor	-
ACLQZX_RS16675 (X12_003315)	-	3845617..3846087 (-)	471	WP_244860033.1	hypothetical protein	-

Sequence

Protein

• Length: 575 a.a.
• Molecular weight: 62504.74 Da
• Isoelectric Point: 5.4464

>NTDB_id=1134970 ACLQZX_RS16610 WP_211914180.1 3830055..3831782(-) (pilB) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1514]
MNVANLVGITGIARRLVQDGVLDEVNARAAMDQAALAKVPLPQWFAEKKLVSAAQLAAANAVEFGMPLMDVSVFDASQNA
VKLVSEELLQKYQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQASNAALGSSLGDDD
DDMGDLDVSSGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAPVKL
SQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDASAAKLGIEKLGYEADQQKLFL
DAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNVKRGMTFAAALRSFLRQDPDII
MVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKAPLPEHA
LLAEGFTAEQMAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQRIGIRDLRQSALVKAA
HGVTSLAEINRVTKD

Nucleotide

• Length: 1728 bp

>NTDB_id=1134970 ACLQZX_RS16610 WP_211914180.1 3830055..3831782(-) (pilB) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1514]
ATGAACGTCGCCAATCTAGTCGGAATCACAGGGATAGCGCGACGGTTAGTTCAAGATGGTGTACTTGACGAAGTTAATGC
TCGAGCAGCAATGGATCAGGCTGCGTTGGCTAAGGTTCCACTGCCACAGTGGTTTGCTGAGAAGAAGCTAGTCTCAGCCG
CTCAGCTGGCTGCAGCCAATGCCGTCGAGTTCGGCATGCCGCTGATGGACGTGTCGGTCTTTGACGCAAGCCAGAACGCA
GTCAAGCTGGTCAGTGAAGAGTTGCTCCAGAAGTACCAGGTGCTGCCGCTGTTCAAGCGCGGCAACCGGTTGTTCGTGGG
GGTGAGCAACCCAACCCAGACCAGGGCGCTGGACGATATCAAGTTCCACACCAATCTGGTGGTGGAGCCGATCCTGGTCG
ATGAGGATCAGATCCGTCGAACATTGGAGCAGTGGCAAGCCAGCAATGCGGCGCTCGGCTCGTCGCTCGGTGACGACGAT
GACGACATGGGGGATCTGGACGTCTCCTCCGGGGACGAGGACATGGGCGCCGGCGGGGATTCCGGGGTCGATGCCAAGGG
CGACGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCCGGCGGGGAGCCTCCGACATCCATTTCG
AGCCGTACGAAGACGATTACCGGGTGCGGCTGCGCATCGATGGCCTGCTGAAGAATGTGGCCAAGGCGCCGGTGAAGTTG
AGCCAGCGCATCGCGGCGCGCCTGAAGGTGATGTCGCAGCTGGACATCGCCGAGAAGCGGGTGCCGCAGGACGGGCGCAT
CAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGTGTCAGTACCTTGCCGACCCTGTTCGGCGAGAAGGTTGTGC
TGCGTATCCTGGACGCCAGTGCGGCCAAGCTGGGGATCGAGAAGCTGGGCTACGAGGCGGATCAGCAGAAGCTGTTCCTG
GATGCGATTCACAAGCCCTACGGGATGGTGCTGGTGACCGGGCCGACCGGTTCGGGCAAGACGGTGTCGTTGTATACGGC
GCTGGGCATCCTTAACGATGAGACGCGCAATATTTCAACGGCCGAGGATCCGGTCGAAATCCGCTTGCCTGGTGTCAATC
AGGTGCAGCAAAACGTCAAGCGCGGCATGACGTTCGCTGCGGCGTTGCGCTCGTTCCTGCGCCAGGATCCGGACATCATC
ATGGTCGGCGAAATCCGCGACCTGGAGACGGCCGAGATTGCGATCAAGGCGGCGCAGACCGGTCACATGGTGTTGTCGAC
GCTGCATACCAATGATGCGCCGCAGACCATCGCGCGTCTGATGAACATGGGCATTGCGCCGTACAACATCACCTCGTCGG
TGACCTTGGTCATTGCACAGCGTCTGGCGCGGCGGTTGTGCAACAACTGCAAGCGCAAGGCACCGCTGCCGGAGCACGCG
CTGTTGGCCGAAGGGTTCACCGCAGAGCAGATGGCTGCCGGAATCGAACTGTACGAGGCGGTGGGCTGCGACGAATGCAC
CGAAGGCTACAAGGGCCGTACCGGTATCTACCAGGTGATGCCGATGACCGACGAAATCGGTGCGATCGTGCTGGAAGGCG
GCAACGCGATGCAGATCGCCGAGGCGGCGCAGAGGATCGGCATCCGCGATCTACGCCAGTCGGCGCTGGTCAAGGCGGCG
CATGGGGTGACGAGCCTGGCCGAGATCAATCGGGTGACGAAGGATTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (198-465)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (46-150)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Acinetobacter baumannii D1279779	55.634	98.783	0.55
pilB	Acinetobacter baylyi ADP1	54.93	98.783	0.543
pilB	Legionella pneumophila strain ERS1305867	52.021	98.957	0.515
pilB	Vibrio cholerae strain A1552	48.432	99.826	0.483
pilF	Neisseria gonorrhoeae MS11	48.415	98.783	0.478
pilB	Vibrio campbellii strain DS40M4	45.343	98.957	0.449
pilB	Vibrio parahaemolyticus RIMD 2210633	45.088	99.13	0.447
pilF	Thermus thermophilus HB27	40.192	90.435	0.363
pilB	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	39.171	92.348	0.362