Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACLVWC_RS05190 Genome accession   NZ_LR962896
Coordinates   1252467..1253726 (-) Length   419 a.a.
NCBI ID   WP_039525808.1    Uniprot ID   -
Organism   Xanthomonas arboricola isolate Xanthomonas sp. CPBF 554     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1247467..1258726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLVWC_RS05160 (X12_001030) - 1248091..1248569 (+) 479 Protein_1006 hypothetical protein -
  ACLVWC_RS05165 (X12_001031) - 1248596..1249273 (+) 678 WP_006448355.1 response regulator transcription factor -
  ACLVWC_RS05170 (X12_001032) - 1249266..1250600 (+) 1335 WP_016904089.1 sensor histidine kinase -
  ACLVWC_RS05175 (X12_001033) - 1250705..1250860 (-) 156 Protein_1009 SymE family type I addiction module toxin -
  ACLVWC_RS05180 (X12_001034) coaE 1250960..1251583 (-) 624 WP_411861412.1 dephospho-CoA kinase -
  ACLVWC_RS05185 (X12_001035) - 1251597..1252460 (-) 864 WP_002812278.1 prepilin peptidase -
  ACLVWC_RS05190 (X12_001036) pilC 1252467..1253726 (-) 1260 WP_039525808.1 type II secretion system F family protein Machinery gene
  ACLVWC_RS05195 - 1254071..1254478 (+) 408 WP_039529754.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACLVWC_RS05200 (X12_001038) pilB 1254780..1256504 (+) 1725 WP_053045683.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACLVWC_RS05205 (X12_001039) pilR 1256802..1258196 (-) 1395 WP_053045681.1 sigma-54-dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45985.24 Da        Isoelectric Point: 10.3065

>NTDB_id=1134928 ACLVWC_RS05190 WP_039525808.1 1252467..1253726(-) (pilC) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 554]
MSVARNAVKNQPVSRNTSLQQPFVWEGTDKRGVKMKGEQTARNANMLRAELRRQGITPTVVKAKPKPLFGSAGKRISSKD
IAFFSRQMATMMKSGIPIVSSLEIIGEGHKNPRMKQMVGQIRSDIEGGSSLQEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQIIVNASRFMVAYWWL
LLLITGGSIFGFIFAYKRSPRMQHGMDRLILKFPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDVMLFKVAEYFEQEVNNAVDALSSLMEPLIMVFLGTVV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1134928 ACLVWC_RS05190 WP_039525808.1 1252467..1253726(-) (pilC) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 554]
ATGTCAGTTGCCCGTAATGCCGTTAAAAATCAGCCGGTGAGCAGGAACACATCGCTGCAGCAGCCGTTCGTGTGGGAAGG
CACGGACAAGCGCGGCGTCAAGATGAAAGGGGAGCAGACCGCACGCAACGCCAACATGCTGCGTGCCGAGCTTCGTCGGC
AAGGCATCACACCTACTGTCGTAAAGGCCAAGCCGAAGCCACTGTTCGGTTCGGCAGGCAAGCGGATCAGCTCCAAGGAT
ATTGCGTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCCGGCATCCCCATCGTGAGCTCTTTGGAAATCATTGGCGA
AGGCCACAAGAATCCGCGAATGAAACAGATGGTCGGCCAAATTCGCAGCGACATAGAGGGTGGATCTTCACTTCAGGAAG
CCATTAGCAAGCACCCAGTTCAATTTGACGAGCTTTATAGGAATCTGGTTCGCGCGGGCGAAGGCGCGGGCGTGCTAGAG
ACGGTGCTAGATACAGTCGCAACATACAAGGAAAATATTGAGGCCCTTAAGGGCAAGATTAAGAAAGCGCTTTTTTATCC
AGCAATGGTTGTTGCCGTGGCAATCATCGTCAGCGCAATTCTATTAATCTTCGTGGTCCCCCAGTTTGAGGAGGTTTTCA
AGAGCTTTGGCGCAGAATTGCCAGCATTCACGCAGATTATCGTAAACGCATCGCGATTCATGGTTGCCTATTGGTGGCTA
CTGCTTCTCATCACTGGGGGATCAATTTTTGGCTTTATTTTTGCCTACAAGCGCTCGCCACGCATGCAGCATGGGATGGA
CAGGCTGATCCTGAAATTTCCGATCATTGGCCAGATCATGCATAACAGCTCGATCGCCAGATTTGCCCGTACCACCGCGG
TGACATTTAAGGCTGGCGTGCCGCTGGTCGAGGCGCTGGGCATTGTGGCAGGCGCAACGGGCAATAAGGTCTACGAAGAA
GCCGTATTGCGAATGCGCGATGACGTCTCCGTCGGCTACCCGGTCAACATGGCCATGAAACAGGTCAACCTGTTCCCTCA
TATGGTAGTGCAGATGACGGCGATTGGCGAAGAGGCGGGTGCCCTAGATGTCATGCTGTTCAAAGTCGCGGAATATTTCG
AGCAAGAGGTCAACAATGCTGTAGATGCCTTGAGCAGCTTGATGGAACCGTTGATCATGGTTTTTCTCGGGACCGTCGTA
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.511

0.506
  pilC Acinetobacter baylyi ADP1

51.724

96.897

0.501
  pilC Legionella pneumophila strain ERS1305867

51.478

96.897

0.499
  pilC Acinetobacter baumannii D1279779

50.37

96.659

0.487
  pilG Neisseria gonorrhoeae MS11

44.552

98.568

0.439
  pilG Neisseria meningitidis 44/76-A

44.068

98.568

0.434
  pilC Vibrio cholerae strain A1552

42.821

94.749

0.406
  pilC Vibrio campbellii strain DS40M4

39.454

96.181

0.379
  pilC Thermus thermophilus HB27

38

95.465

0.363

Multiple sequence alignment