Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACLVWC_RS05205 Genome accession   NZ_LR962896
Coordinates   1256802..1258196 (-) Length   464 a.a.
NCBI ID   WP_053045681.1    Uniprot ID   -
Organism   Xanthomonas arboricola isolate Xanthomonas sp. CPBF 554     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1251802..1263196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLVWC_RS05190 (X12_001036) pilC 1252467..1253726 (-) 1260 WP_039525808.1 type II secretion system F family protein Machinery gene
  ACLVWC_RS05195 - 1254071..1254478 (+) 408 WP_039529754.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACLVWC_RS05200 (X12_001038) pilB 1254780..1256504 (+) 1725 WP_053045683.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACLVWC_RS05205 (X12_001039) pilR 1256802..1258196 (-) 1395 WP_053045681.1 sigma-54-dependent transcriptional regulator Regulator
  ACLVWC_RS05210 (X12_001040) - 1258389..1260002 (-) 1614 WP_016901263.1 sensor histidine kinase -
  ACLVWC_RS05215 (X12_001041) sucC 1260234..1261403 (+) 1170 WP_053045679.1 ADP-forming succinate--CoA ligase subunit beta -
  ACLVWC_RS05220 (X12_001042) sucD 1261428..1262303 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50148.58 Da        Isoelectric Point: 6.5112

>NTDB_id=1134930 ACLVWC_RS05205 WP_053045681.1 1256802..1258196(-) (pilR) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 554]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPLAPPPEQASRLLGDSAAMEGLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1134930 ACLVWC_RS05205 WP_053045681.1 1256802..1258196(-) (pilR) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 554]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAATTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATTGAACTGGTTACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCTTTGAAGGCCGGTGCCTTCGACTTCGTCAGCAAGCCGGT
GGATATCAGCGTACTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGCCCCGCCCCACTCGCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCGCCGCGATGGAAGGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCACGAACAGGGCGC
ACGCGCGGCCGGCCCGTTCGTGCCGGTCAACTGTGGCGCCATTCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAGGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGTTGCGCGCGATCCAGGAAAAATCAGTGCGCCCGGTGGGCGC
CTCCAGCGAGTCGCTGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGAACCTGGGTGACCTGGTCTCCGATGGCCGTT
TTCGTCACGACCTGTACTACCGCATCAATGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCGCATAGCCACGGCCGGCCGATTCCGCTGCTGACCCAGTCCGCGCTCGA
CGCGCTGGACCAGTACGGCTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTCGCCGCCACTCCCGGCAGCGCCGCC
GTCGAACCCCGCGAAGCGGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCTTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCGCTGGAGGAGAATCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment