Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H7A86_RS15520 Genome accession   NZ_LR861803
Coordinates   3709683..3710942 (+) Length   419 a.a.
NCBI ID   WP_119131073.1    Uniprot ID   A0A8E4ESI9
Organism   Xanthomonas euroxanthea isolate     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3704683..3715942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7A86_RS15505 (XSP_003117) pilR 3705213..3706607 (+) 1395 WP_164739181.1 sigma-54 dependent transcriptional regulator Regulator
  H7A86_RS15510 (XSP_003118) pilB 3706892..3708616 (-) 1725 WP_119131075.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H7A86_RS21145 (XSP_003119) - 3708930..3709337 (-) 408 WP_119131074.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  H7A86_RS15520 (XSP_003120) pilC 3709683..3710942 (+) 1260 WP_119131073.1 type II secretion system F family protein Machinery gene
  H7A86_RS15525 (XSP_003121) - 3710949..3711812 (+) 864 WP_119131072.1 A24 family peptidase -
  H7A86_RS15530 (XSP_003122) coaE 3711826..3712431 (+) 606 WP_119131071.1 dephospho-CoA kinase -
  H7A86_RS15535 (XSP_003123) - 3712641..3712969 (+) 329 Protein_3065 SymE family type I addiction module toxin -
  H7A86_RS15540 (XSP_003124) - 3713075..3714409 (-) 1335 WP_166763130.1 HAMP domain-containing sensor histidine kinase -
  H7A86_RS15545 (XSP_003125) - 3714402..3715079 (-) 678 WP_006448355.1 response regulator transcription factor -
  H7A86_RS15550 (XSP_003126) - 3715170..3715511 (-) 342 WP_232099114.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45955.21 Da        Isoelectric Point: 10.3065

>NTDB_id=1132443 H7A86_RS15520 WP_119131073.1 3709683..3710942(+) (pilC) [Xanthomonas euroxanthea isolate]
MSVARNAVKNQPVSRNTSLQQPFVWEGTDKRGVKMKGEQTARNANMLRAELRRQGITPTVVKAKPKPLFGSAGKRISSKD
IAFFSRQMATMMKSGIPIVSSLEIIGEGHKNPRMKQMVGQVRSDIEGGSSLQEAIGKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQIIVNASRFMVAYWWL
LLLITGASIFGFIFAYKRSPRMQHGMDRLILKFPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDVMLFKVAEYFEQEVNNAVDALSSLMEPLIMVFLGTVV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1132443 H7A86_RS15520 WP_119131073.1 3709683..3710942(+) (pilC) [Xanthomonas euroxanthea isolate]
ATGTCAGTTGCCCGTAATGCCGTTAAAAATCAGCCGGTGAGCAGGAACACATCGCTGCAGCAACCGTTCGTGTGGGAAGG
CACGGACAAGCGCGGCGTCAAGATGAAAGGGGAGCAGACCGCACGCAACGCCAACATGCTGCGTGCCGAGCTTCGTCGGC
AAGGCATCACACCTACTGTCGTAAAGGCCAAGCCGAAGCCACTGTTCGGTTCGGCAGGCAAGCGGATCAGCTCCAAGGAT
ATTGCGTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCCGGCATCCCCATCGTGAGCTCTTTGGAAATCATTGGCGA
GGGTCACAAGAATCCGCGAATGAAACAGATGGTCGGCCAAGTTCGCAGCGACATAGAAGGTGGATCTTCGCTTCAGGAAG
CCATTGGCAAGCACCCAGTTCAATTTGACGAGCTTTATAGGAATCTGGTTCGCGCGGGCGAAGGCGCGGGCGTGCTAGAG
ACGGTGCTAGATACGGTGGCAACATACAAGGAAAATATTGAGGCCCTTAAGGGCAAGATTAAGAAAGCACTTTTTTATCC
AGCAATGGTTGTTGCCGTGGCAATCATCGTCAGCGCAATTCTATTAATCTTCGTGGTCCCCCAGTTTGAAGAGGTTTTCA
AGAGCTTTGGCGCAGAATTGCCAGCATTCACGCAGATTATCGTAAACGCATCGCGATTCATGGTTGCCTATTGGTGGCTA
CTGCTTCTCATCACTGGGGCATCAATTTTTGGCTTTATTTTTGCCTACAAGCGCTCGCCACGCATGCAACATGGGATGGA
CAGGCTAATCCTGAAATTTCCGATCATTGGCCAGATCATGCATAACAGCTCGATCGCCAGATTTGCCCGCACCACCGCGG
TGACATTCAAGGCCGGCGTGCCGTTAGTCGAGGCGCTAGGCATTGTGGCAGGTGCGACAGGCAATAAGGTCTATGAAGAA
GCCGTATTGCGAATGCGCGATGACGTCTCTGTCGGCTACCCGGTGAACATGGCCATGAAACAGGTCAACCTGTTCCCTCA
TATGGTGGTGCAGATGACGGCGATTGGCGAAGAGGCAGGCGCCCTAGATGTCATGCTGTTCAAAGTTGCGGAATATTTCG
AGCAAGAGGTCAACAACGCTGTAGATGCCTTGAGCAGCCTGATGGAACCATTGATCATGGTTTTTCTGGGGACTGTTGTA
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTTGGCGCAGTGGTGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.283

94.511

0.504
  pilC Acinetobacter baylyi ADP1

51.97

96.897

0.504
  pilC Legionella pneumophila strain ERS1305867

50.985

96.897

0.494
  pilC Acinetobacter baumannii D1279779

50.37

96.659

0.487
  pilG Neisseria gonorrhoeae MS11

44.175

98.329

0.434
  pilG Neisseria meningitidis 44/76-A

43.584

98.568

0.43
  pilC Vibrio cholerae strain A1552

42.821

94.749

0.406
  pilC Vibrio campbellii strain DS40M4

39.702

96.181

0.382
  pilC Thermus thermophilus HB27

38.25

95.465

0.365

Multiple sequence alignment