Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   H7A86_RS15505 Genome accession   NZ_LR861803
Coordinates   3705213..3706607 (+) Length   464 a.a.
NCBI ID   WP_164739181.1    Uniprot ID   -
Organism   Xanthomonas euroxanthea isolate     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3700213..3711607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7A86_RS15485 - 3700610..3701041 (-) 432 WP_180707910.1 hypothetical protein -
  H7A86_RS15490 (XSP_003114) sucD 3701117..3701992 (-) 876 WP_047124757.1 succinate--CoA ligase subunit alpha -
  H7A86_RS15495 (XSP_003115) sucC 3702017..3703186 (-) 1170 WP_016901264.1 ADP-forming succinate--CoA ligase subunit beta -
  H7A86_RS15500 (XSP_003116) - 3703418..3705031 (+) 1614 WP_104544483.1 HAMP domain-containing sensor histidine kinase -
  H7A86_RS15505 (XSP_003117) pilR 3705213..3706607 (+) 1395 WP_164739181.1 sigma-54 dependent transcriptional regulator Regulator
  H7A86_RS15510 (XSP_003118) pilB 3706892..3708616 (-) 1725 WP_119131075.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H7A86_RS21145 (XSP_003119) - 3708930..3709337 (-) 408 WP_119131074.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  H7A86_RS15520 (XSP_003120) pilC 3709683..3710942 (+) 1260 WP_119131073.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50178.56 Da        Isoelectric Point: 6.5112

>NTDB_id=1132441 H7A86_RS15505 WP_164739181.1 3705213..3706607(+) (pilR) [Xanthomonas euroxanthea isolate]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPAPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1132441 H7A86_RS15505 WP_164739181.1 3705213..3706607(+) (pilR) [Xanthomonas euroxanthea isolate]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCTGACGGCAACGGCATCGAGCTGGTCACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATTACCGCGTTCGGCAGCATGGACCTGGCGGTGGAGGCCTTGAAGGCCGGTGCCTTTGACTTCGTCAGCAAGCCGGT
GGATATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGCCCCGCTCCGCCGGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTGGGCGATTCCAGCGCGATGGAAAGTCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCACGAACAGGGCGC
CCGTGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATCCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTCCTGGAC
GAAGTGGCCGAGCTACCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCCAGCGAGTCGCTGGTGGACGTGCGCATCCTATCGGCCACGCACAAGAATCTCGGCGACTTGGTCTCCGACGGCCGTT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAGCTGGCCGCGGCGATCATCGCCCGCCTGGCGCACAGCCATGGCCGCCCGATACCGCTACTGACCCAGTCCGCGCTCGA
TGCGCTGGACCAGTACGGCTTCCCGGGCAACGTCCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTGGCCGCCACCCCCGGCAGCGCCGCG
GTAGAACCGCGCGAAGCCGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGCTACAAGTTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.261

99.138

0.627
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment