Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CFBP498_RS05555 Genome accession   NZ_LR828253
Coordinates   1320128..1321384 (-) Length   418 a.a.
NCBI ID   WP_043907071.1    Uniprot ID   A0A6V7CAU3
Organism   Xanthomonas hortorum pv. gardneri strain CFBP 8129     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1315128..1326384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP498_RS05525 (CFBP8129_11170) - 1315634..1316968 (+) 1335 WP_006448356.1 sensor histidine kinase -
  CFBP498_RS05530 (CFBP8129_11180) - 1317104..1317406 (-) 303 WP_006448357.1 type II toxin-antitoxin system RelE/ParE family toxin -
  CFBP498_RS05535 (CFBP8129_11190) - 1317403..1317588 (-) 186 WP_006448358.1 hypothetical protein -
  CFBP498_RS05540 (CFBP8129_11200) - 1317686..1318087 (-) 402 WP_006448359.1 SymE family type I addiction module toxin -
  CFBP498_RS05545 (CFBP8129_11220) coaE 1318621..1319244 (-) 624 WP_006448360.1 dephospho-CoA kinase -
  CFBP498_RS05550 (CFBP8129_11230) - 1319258..1320121 (-) 864 WP_002812278.1 prepilin peptidase -
  CFBP498_RS05555 (CFBP8129_11240) pilC 1320128..1321384 (-) 1257 WP_043907071.1 type II secretion system F family protein Machinery gene
  CFBP498_RS05560 (CFBP8129_11250) pilA 1321735..1322151 (+) 417 WP_006448362.1 pilin Machinery gene
  CFBP498_RS05565 - 1322228..1322659 (+) 432 WP_043907066.1 pilin -
  CFBP498_RS05570 (CFBP8129_11260) pilB 1322724..1324460 (+) 1737 WP_043907067.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CFBP498_RS05575 (CFBP8129_11270) - 1324590..1324772 (-) 183 WP_074066024.1 YhfG family protein -
  CFBP498_RS05580 (CFBP8129_11280) pilR 1324846..1326240 (-) 1395 WP_006448366.1 sigma-54-dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45545.04 Da        Isoelectric Point: 10.3591

>NTDB_id=1132379 CFBP498_RS05555 WP_043907071.1 1320128..1321384(-) (pilC) [Xanthomonas hortorum pv. gardneri strain CFBP 8129]
MSAVRSAVKAKPASQAEQMSPFVWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPLMVKVKPKPLFGAAGKKVSAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRKMVGQIRTDIEGGSSLHEAVSKHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENLEALKGKIKKALFYPAMVMAVAILVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLM
LIVAVGAIVGFIFAYKRSPAMQHGMDRLILKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKA
VIRMREDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1132379 CFBP498_RS05555 WP_043907071.1 1320128..1321384(-) (pilC) [Xanthomonas hortorum pv. gardneri strain CFBP 8129]
ATGTCGGCAGTACGTAGTGCAGTCAAAGCCAAGCCTGCCTCACAGGCTGAACAGATGAGCCCATTTGTTTGGGAGGGGAC
AGACAAGCGCGGCGTCAAGATGAAGGGCGAACAGACCGCCCGTAATGCCAATTTGCTACGCGCAGAATTGCGGAGGCAAG
GCATCACACCACTGATGGTCAAAGTGAAGCCCAAACCGCTATTTGGTGCTGCGGGCAAGAAAGTCTCCGCAAAGGATATC
TCTTTCTTTAGTCGACAGATGGCCACAATGATGAAATCAGGTGTACCTATCGTAGGCGCACTGGAGATCATTGGCAGCGG
ACAGAAAAATCCACGCATGCGCAAAATGGTTGGGCAGATCCGTACCGATATCGAAGGAGGATCGTCGCTACATGAGGCCG
TAAGCAAGCACCCAGTGCAGTTTGACGAGCTCTATCGGAACTTGGTCAAGGCAGGCGAAGGCGCAGGCGTGTTGGAAACT
GTGCTGGACACTGTTGCTACTTATAAAGAGAATCTGGAAGCACTTAAGGGCAAGATTAAAAAAGCACTATTTTATCCAGC
CATGGTCATGGCAGTAGCAATTCTGGTGAGTTCAATCTTGCTCGTCTGGGTCGTCCCCCAATTTGAAGACGTCTTTAAGG
GCTTCGGCGCAGAGCTTCCCGCTTTTACCCAAATGATCGTCAACTTATCGCGTTTTATGGTGTCTTGGTGGTGGCTGATG
TTGATCGTAGCCGTGGGCGCAATAGTGGGCTTTATCTTCGCGTATAAGCGCTCGCCAGCAATGCAACACGGCATGGATCG
CTTGATCCTTAAAGTGCCGATCATTGGCCAGATCATGCACAACAGCTCTATCGCGCGTTTTGCTCGCACAACGGCCGTCA
CATTCAAAGCAGGCGTACCTCTAGTCGAGGCACTCGGTATTGTGGCCGGTGCTACAGGCAACTCTGTCTATGAAAAAGCG
GTAATTCGCATGCGCGAAGACGTATCTGTGGGCTATCCCGTCAACATGGCGATGAAGCAAGTCAATCTGTTCCCTCACAT
GGTGGTGCAGATGACTGCCATCGGCGAAGAGGCCGGCGCCTTGGATGCCATGCTGTTCAAAGTGGCTGAGTACTTCGAGC
AAGAGGTCAACAATGCTGTCGACGCGCTCAGCAGCCTGATCGAACCCCTGATCATGGTATTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6V7CAU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.086

96.89

0.514
  pilC Acinetobacter baumannii D1279779

52.475

96.651

0.507
  pilC Acinetobacter baylyi ADP1

51.97

97.129

0.505
  pilC Legionella pneumophila strain ERS1305867

52.02

94.737

0.493
  pilG Neisseria gonorrhoeae MS11

43.564

96.651

0.421
  pilG Neisseria meningitidis 44/76-A

43.069

96.651

0.416
  pilC Vibrio cholerae strain A1552

41.626

97.129

0.404
  pilC Vibrio campbellii strain DS40M4

39.702

96.411

0.383

Multiple sequence alignment