Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CFBP498_RS05580 Genome accession   NZ_LR828253
Coordinates   1324846..1326240 (-) Length   464 a.a.
NCBI ID   WP_006448366.1    Uniprot ID   A0A6V7CAS5
Organism   Xanthomonas hortorum pv. gardneri strain CFBP 8129     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1319846..1331240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP498_RS05555 (CFBP8129_11240) pilC 1320128..1321384 (-) 1257 WP_043907071.1 type II secretion system F family protein Machinery gene
  CFBP498_RS05560 (CFBP8129_11250) pilA 1321735..1322151 (+) 417 WP_006448362.1 pilin Machinery gene
  CFBP498_RS05565 - 1322228..1322659 (+) 432 WP_043907066.1 pilin -
  CFBP498_RS05570 (CFBP8129_11260) pilB 1322724..1324460 (+) 1737 WP_043907067.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CFBP498_RS05575 (CFBP8129_11270) - 1324590..1324772 (-) 183 WP_074066024.1 YhfG family protein -
  CFBP498_RS05580 (CFBP8129_11280) pilR 1324846..1326240 (-) 1395 WP_006448366.1 sigma-54-dependent transcriptional regulator Regulator
  CFBP498_RS05585 (CFBP8129_11290) - 1326386..1327999 (-) 1614 WP_006448368.1 sensor histidine kinase -
  CFBP498_RS05590 (CFBP8129_11300) sucC 1328232..1329401 (+) 1170 WP_006450728.1 ADP-forming succinate--CoA ligase subunit beta -
  CFBP498_RS05595 (CFBP8129_11310) sucD 1329426..1330301 (+) 876 WP_006450729.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50234.62 Da        Isoelectric Point: 6.5129

>NTDB_id=1132382 CFBP498_RS05580 WP_006448366.1 1324846..1326240(-) (pilR) [Xanthomonas hortorum pv. gardneri strain CFBP 8129]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEISKQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMQSLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASTESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1132382 CFBP498_RS05580 WP_006448366.1 1324846..1326240(-) (pilR) [Xanthomonas hortorum pv. gardneri strain CFBP 8129]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACTGCTGCCAATCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAACCCCTACGACCTGTGCCTGA
CCGACATGCGCCTGCCAGACGGCAACGGCATCGAACTGGTCACCGAAATCTCAAAGCAATATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCACCGCCAC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGCAAAGCCTGCGCGCCACCATCGGCAAGGTCGCACGC
AGCCAGGCGCCGGTCTATATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGCGCCGCCGGCCCGTTCGTGCCGGTGAACTGCGGCGCCATTCCCGCCGAATTGATGGAGAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCTGGCCTGTTCCAGGCCGCGCATGGCGGTACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAACTGCTGCGCGCCATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCCACCGAATCGCTGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTCGGCGACCTGGTCTCCGACGGCCGTT
TTCGTCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCCCTGCGCGAACGCAGCGGCGACCTGCCG
CAACTGGCCGCCGCCATCATCGCGCGCCTGGCACGCAGCCACGGCCGCCCGATTCCGCTGCTGACCCAATCCGCACTCGA
CGCGCTGGACACATACGGTTTTCCCGGCAACGTACGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAGCAACTCGAGCGCGC
CGCGATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAGAACCGCCGCGCAGCTGGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTGAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6V7CAS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

99.784

0.631
  pilR Acinetobacter baumannii strain A118

49.353

100

0.494

Multiple sequence alignment