Detailed information NTG1132323

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: H1W81_RS02155
• Genome accession: NZ_LR824002
• Coordinates: 392236..392628 (+)
• Length: 130 a.a.
• NCBI ID: WP_011226610.1
• Uniprot ID: A0A3G6K2H6
• Organism: Streptococcus thermophilus isolate STH_CIRM_67
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 387236..397628

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1W81_RS02120 (STHERMO_0438)	proC	387439..388209 (-)	771	WP_011226616.1	pyrroline-5-carboxylate reductase	-
H1W81_RS02125 (STHERMO_0439)	pepA	388225..389292 (-)	1068	WP_011226615.1	glutamyl aminopeptidase	-
H1W81_RS02130 (STHERMO_0440)	-	389392..389676 (+)	285	WP_002952020.1	DUF4651 domain-containing protein	-
H1W81_RS02135 (STHERMO_0441)	-	389673..389987 (+)	315	WP_011226613.1	thioredoxin family protein	-
H1W81_RS02140 (STHERMO_0442)	ytpR	389997..390620 (+)	624	WP_002952017.1	YtpR family tRNA-binding protein	-
H1W81_RS02145 (STHERMO_0443)	-	390758..391789 (+)	1032	WP_180484816.1	YeeE/YedE family protein	-
H1W81_RS02150 (STHERMO_0444)	-	391804..392031 (+)	228	WP_011226611.1	sulfurtransferase TusA family protein	-
H1W81_RS02155 (STHERMO_0445)	ssbA	392236..392628 (+)	393	WP_011226610.1	single-stranded DNA-binding protein	Machinery gene
H1W81_RS02160 (STHERMO_0447)	tadA	393388..393906 (+)	519	WP_011226609.1	tRNA adenosine(34) deaminase TadA	-
H1W81_RS02165 (STHERMO_0448)	-	393987..394250 (-)	264	WP_011681674.1	hypothetical protein	-
H1W81_RS02170 (STHERMO_0449)	-	394303..394470 (-)	168	WP_002945733.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
H1W81_RS02180 (STHERMO_0450)	-	394839..395672 (+)	834	WP_011226608.1	methyltransferase domain-containing protein	-
H1W81_RS09840	-	395787..396541 (+)	755	Protein_374	HAD family hydrolase	-
H1W81_RS02190 (STHERMO_0453)	dapD	396627..397325 (+)	699	WP_002951996.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14773.70 Da
• Isoelectric Point: 5.9275

>NTDB_id=1132323 H1W81_RS02155 WP_011226610.1 392236..392628(+) (ssbA) [Streptococcus thermophilus isolate STH_CIRM_67]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGEIRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=1132323 H1W81_RS02155 WP_011226610.1 392236..392628(+) (ssbA) [Streptococcus thermophilus isolate STH_CIRM_67]
ATGTATAACAAAGTAATTTTAATTGGACGTTTGACAGCAACACCTGAAATGGTTAAGACTGCTAGTGACAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGATTTTATCACAGTAGTGGTTT
GGGGCCGTTTAGCTGAGACATTGGCATCTTATGCTAGCAAGGGAAGTTTAATTTCTCTTGATGGTGAGATTCGCACTCGT
AAGTATGATAAGGATGGTCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

3D structure

• AlphaFold DB: A0A3G6K2H6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	79.389	100	0.8
ssbB	Streptococcus sobrinus strain NIDR 6715-7	76.336	100	0.769
ssbB/cilA	Streptococcus pneumoniae TIGR4	74.809	100	0.754
ssbB/cilA	Streptococcus mitis SK321	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae R6	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae Rx1	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae D39	74.046	100	0.746
ssbB/cilA	Streptococcus mitis NCTC 12261	72.519	100	0.731
ssbB	Lactococcus lactis subsp. cremoris KW2	62.5	86.154	0.538
ssbA	Bacillus subtilis subsp. subtilis str. 168	47.17	81.538	0.385
ssb	Latilactobacillus sakei subsp. sakei 23K	46.226	81.538	0.377