Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | LJDFIFNA_RS05180 | Genome accession | NZ_LR822060 |
| Coordinates | 1009827..1010252 (-) | Length | 141 a.a. |
| NCBI ID | WP_015978401.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus isolate P3.1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 975253..1020137 | 1009827..1010252 | within | 0 |
Gene organization within MGE regions
Location: 975253..1020137
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJDFIFNA_RS04920 (BKMNNEJI_00937) | - | 975253..976104 (-) | 852 | Protein_943 | SH3 domain-containing protein | - |
| LJDFIFNA_RS04925 (BKMNNEJI_00938) | - | 976416..976961 (-) | 546 | WP_000136401.1 | NUMOD4 motif-containing HNH endonuclease | - |
| LJDFIFNA_RS04930 (BKMNNEJI_00939) | - | 977024..977632 (-) | 609 | Protein_945 | CHAP domain-containing protein | - |
| LJDFIFNA_RS04935 (BKMNNEJI_00940) | - | 977613..978050 (-) | 438 | WP_000354128.1 | phage holin | - |
| LJDFIFNA_RS04940 (BKMNNEJI_00941) | - | 978105..978500 (-) | 396 | WP_031782932.1 | hypothetical protein | - |
| LJDFIFNA_RS04945 (BKMNNEJI_00942) | - | 978505..979743 (-) | 1239 | WP_000276641.1 | BppU family phage baseplate upper protein | - |
| LJDFIFNA_RS04950 (BKMNNEJI_00943) | - | 979756..981630 (-) | 1875 | WP_031879469.1 | glucosaminidase domain-containing protein | - |
| LJDFIFNA_RS04955 (BKMNNEJI_00944) | - | 981767..982066 (-) | 300 | WP_000466769.1 | DUF2951 domain-containing protein | - |
| LJDFIFNA_RS04960 (BKMNNEJI_00945) | - | 982107..982280 (-) | 174 | WP_001790193.1 | XkdX family protein | - |
| LJDFIFNA_RS04965 (BKMNNEJI_00946) | - | 982284..982661 (-) | 378 | WP_000705893.1 | DUF2977 domain-containing protein | - |
| LJDFIFNA_RS04970 (BKMNNEJI_00947) | - | 982661..984484 (-) | 1824 | WP_031879468.1 | phage baseplate upper protein | - |
| LJDFIFNA_RS04975 (BKMNNEJI_00948) | - | 984484..986382 (-) | 1899 | WP_031782926.1 | hypothetical protein | - |
| LJDFIFNA_RS04980 (BKMNNEJI_00949) | - | 986395..988281 (-) | 1887 | WP_001573307.1 | SGNH/GDSL hydrolase family protein | - |
| LJDFIFNA_RS04985 (BKMNNEJI_00950) | - | 988292..989233 (-) | 942 | WP_000560181.1 | phage tail domain-containing protein | - |
| LJDFIFNA_RS04990 (BKMNNEJI_00951) | - | 989248..992133 (-) | 2886 | WP_031783644.1 | terminase | - |
| LJDFIFNA_RS04995 (BKMNNEJI_00952) | - | 992137..992421 (-) | 285 | WP_000880587.1 | hypothetical protein | - |
| LJDFIFNA_RS05000 (BKMNNEJI_00953) | - | 992466..992972 (-) | 507 | WP_000134337.1 | tail assembly chaperone | - |
| LJDFIFNA_RS05005 (BKMNNEJI_00954) | - | 993039..993596 (-) | 558 | WP_001604157.1 | hypothetical protein | - |
| LJDFIFNA_RS05010 (BKMNNEJI_00955) | - | 993597..994022 (-) | 426 | WP_031782924.1 | DUF3168 domain-containing protein | - |
| LJDFIFNA_RS05015 (BKMNNEJI_00956) | - | 994035..994448 (-) | 414 | WP_001151328.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| LJDFIFNA_RS05020 (BKMNNEJI_00957) | - | 994435..994770 (-) | 336 | WP_031782923.1 | phage head closure protein | - |
| LJDFIFNA_RS05025 (BKMNNEJI_00958) | - | 994782..995132 (-) | 351 | WP_031782922.1 | phage head-tail adapter protein | - |
| LJDFIFNA_RS05030 (BKMNNEJI_00959) | - | 995138..995281 (-) | 144 | WP_164091316.1 | hypothetical protein | - |
| LJDFIFNA_RS05035 (BKMNNEJI_00960) | - | 995293..996207 (-) | 915 | WP_000235168.1 | phage major capsid protein | - |
| LJDFIFNA_RS05040 (BKMNNEJI_00961) | - | 996224..996808 (-) | 585 | WP_001019221.1 | DUF4355 domain-containing protein | - |
| LJDFIFNA_RS05045 (BKMNNEJI_00962) | - | 996904..997854 (-) | 951 | WP_001604161.1 | phage head morphogenesis protein | - |
| LJDFIFNA_RS05050 (BKMNNEJI_00963) | - | 997823..999247 (-) | 1425 | WP_031783645.1 | phage portal protein | - |
| LJDFIFNA_RS05055 (BKMNNEJI_00964) | - | 999244..1000467 (-) | 1224 | WP_031783646.1 | PBSX family phage terminase large subunit | - |
| LJDFIFNA_RS05060 (BKMNNEJI_00965) | - | 1000460..1000954 (-) | 495 | WP_000594079.1 | terminase small subunit | - |
| LJDFIFNA_RS05065 (BKMNNEJI_00966) | - | 1001307..1001708 (-) | 402 | WP_031782919.1 | hypothetical protein | - |
| LJDFIFNA_RS05070 (BKMNNEJI_00967) | rinB | 1001709..1001882 (-) | 174 | WP_031783103.1 | transcriptional activator RinB | - |
| LJDFIFNA_RS05075 (BKMNNEJI_00968) | - | 1001875..1002078 (-) | 204 | WP_001072797.1 | hypothetical protein | - |
| LJDFIFNA_RS05080 (BKMNNEJI_00969) | - | 1002075..1002269 (-) | 195 | WP_000132920.1 | hypothetical protein | - |
| LJDFIFNA_RS05085 (BKMNNEJI_00970) | - | 1002266..1002472 (-) | 207 | WP_000195785.1 | DUF1381 domain-containing protein | - |
| LJDFIFNA_RS05090 (BKMNNEJI_00971) | - | 1002509..1003039 (-) | 531 | WP_000185651.1 | dUTP diphosphatase | - |
| LJDFIFNA_RS05095 (BKMNNEJI_00972) | - | 1003032..1003214 (-) | 183 | WP_000028421.1 | hypothetical protein | - |
| LJDFIFNA_RS05100 (BKMNNEJI_00973) | - | 1003219..1003455 (-) | 237 | WP_001065079.1 | DUF1024 family protein | - |
| LJDFIFNA_RS05105 (BKMNNEJI_00974) | - | 1003448..1003756 (-) | 309 | WP_000144708.1 | hypothetical protein | - |
| LJDFIFNA_RS05110 (BKMNNEJI_00975) | - | 1003753..1004100 (-) | 348 | WP_000979209.1 | YopX family protein | - |
| LJDFIFNA_RS05115 (BKMNNEJI_00976) | - | 1004097..1004501 (-) | 405 | WP_020444668.1 | hypothetical protein | - |
| LJDFIFNA_RS05120 (BKMNNEJI_00977) | - | 1004514..1004762 (-) | 249 | WP_072466103.1 | SAV1978 family virulence-associated passenger protein | - |
| LJDFIFNA_RS05125 (BKMNNEJI_00978) | - | 1004762..1005016 (-) | 255 | WP_000022736.1 | DUF3310 domain-containing protein | - |
| LJDFIFNA_RS05130 (H0509_RS05130) | - | 1005016..1005141 (-) | 126 | Protein_985 | SA1788 family PVL leukocidin-associated protein | - |
| LJDFIFNA_RS05135 (BKMNNEJI_00979) | - | 1005209..1005394 (-) | 186 | WP_031783102.1 | DUF3113 family protein | - |
| LJDFIFNA_RS05140 (BKMNNEJI_00980) | - | 1005394..1005801 (-) | 408 | WP_000401950.1 | RusA family crossover junction endodeoxyribonuclease | - |
| LJDFIFNA_RS05145 (BKMNNEJI_00981) | - | 1005811..1006032 (-) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| LJDFIFNA_RS05150 (BKMNNEJI_00982) | - | 1006036..1006251 (-) | 216 | WP_001024405.1 | hypothetical protein | - |
| LJDFIFNA_RS05155 (BKMNNEJI_00983) | - | 1006248..1007489 (-) | 1242 | WP_015445891.1 | DnaB helicase C-terminal domain-containing protein | - |
| LJDFIFNA_RS05160 (BKMNNEJI_00984) | - | 1007486..1007842 (-) | 357 | WP_001132243.1 | hypothetical protein | - |
| LJDFIFNA_RS05165 (BKMNNEJI_00985) | - | 1007842..1008597 (-) | 756 | WP_001037657.1 | DnaD domain protein | - |
| LJDFIFNA_RS05170 (BKMNNEJI_00986) | - | 1008590..1009264 (-) | 675 | WP_031879467.1 | putative HNHc nuclease | - |
| LJDFIFNA_RS05175 (BKMNNEJI_00987) | - | 1009265..1009816 (-) | 552 | WP_001004506.1 | NUMOD4 domain-containing protein | - |
| LJDFIFNA_RS05180 (BKMNNEJI_00988) | ssbA | 1009827..1010252 (-) | 426 | WP_015978401.1 | single-stranded DNA-binding protein | Machinery gene |
| LJDFIFNA_RS05185 (BKMNNEJI_00989) | - | 1010252..1010875 (-) | 624 | WP_000139720.1 | DUF1071 domain-containing protein | - |
| LJDFIFNA_RS05190 (BKMNNEJI_00990) | - | 1010868..1011089 (-) | 222 | WP_001077280.1 | DUF2483 family protein | - |
| LJDFIFNA_RS05195 (BKMNNEJI_00991) | - | 1011099..1011359 (-) | 261 | WP_000291089.1 | DUF1108 family protein | - |
| LJDFIFNA_RS05200 (BKMNNEJI_00992) | - | 1011453..1011614 (-) | 162 | WP_031879466.1 | DUF1270 family protein | - |
| LJDFIFNA_RS15275 (BKMNNEJI_00993) | - | 1011607..1011735 (-) | 129 | WP_001559112.1 | hypothetical protein | - |
| LJDFIFNA_RS05210 (BKMNNEJI_00994) | - | 1011794..1012024 (+) | 231 | WP_000395457.1 | hypothetical protein | - |
| LJDFIFNA_RS05215 (BKMNNEJI_00995) | - | 1011999..1012175 (-) | 177 | WP_001094935.1 | hypothetical protein | - |
| LJDFIFNA_RS05220 (BKMNNEJI_00996) | - | 1012191..1012943 (-) | 753 | WP_023487064.1 | phage antirepressor KilAC domain-containing protein | - |
| LJDFIFNA_RS05225 (BKMNNEJI_00997) | - | 1012945..1013130 (-) | 186 | WP_000933363.1 | helix-turn-helix domain-containing protein | - |
| LJDFIFNA_RS05230 (BKMNNEJI_00998) | - | 1013570..1013779 (+) | 210 | WP_000642492.1 | hypothetical protein | - |
| LJDFIFNA_RS05235 (BKMNNEJI_00999) | - | 1013769..1013912 (-) | 144 | WP_001648348.1 | hypothetical protein | - |
| LJDFIFNA_RS05240 (BKMNNEJI_01000) | - | 1013927..1014373 (-) | 447 | WP_031879465.1 | hypothetical protein | - |
| LJDFIFNA_RS05245 (BKMNNEJI_01001) | - | 1014391..1014615 (-) | 225 | WP_000333485.1 | DUF739 family protein | - |
| LJDFIFNA_RS05250 (BKMNNEJI_01002) | - | 1014777..1015157 (+) | 381 | WP_001089477.1 | helix-turn-helix domain-containing protein | - |
| LJDFIFNA_RS05255 (BKMNNEJI_01003) | - | 1015179..1015640 (+) | 462 | WP_017804659.1 | ImmA/IrrE family metallo-endopeptidase | - |
| LJDFIFNA_RS05260 (BKMNNEJI_01004) | - | 1015672..1016352 (+) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| LJDFIFNA_RS05265 (BKMNNEJI_01005) | - | 1016559..1017944 (+) | 1386 | WP_000861313.1 | recombinase family protein | - |
| LJDFIFNA_RS05270 (BKMNNEJI_01006) | rpmF | 1018061..1018234 (-) | 174 | WP_000290472.1 | 50S ribosomal protein L32 | - |
| LJDFIFNA_RS05275 (BKMNNEJI_01007) | - | 1018314..1018871 (-) | 558 | WP_000872158.1 | YceD family protein | - |
| LJDFIFNA_RS05280 (BKMNNEJI_01008) | - | 1018998..1020137 (+) | 1140 | WP_000843611.1 | nucleotidyltransferase | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15947.45 Da Isoelectric Point: 5.8790
>NTDB_id=1132235 LJDFIFNA_RS05180 WP_015978401.1 1009827..1010252(-) (ssbA) [Staphylococcus aureus isolate P3.1]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=1132235 LJDFIFNA_RS05180 WP_015978401.1 1009827..1010252(-) (ssbA) [Staphylococcus aureus isolate P3.1]
ATGTTAAATAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
ATGTTAAATAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
74.576 |
83.688 |
0.624 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.603 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
75.177 |
0.44 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.553 |
100 |
0.426 |
| ssbA | Streptococcus mutans UA159 |
41.844 |
100 |
0.418 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.915 |
83.688 |
0.376 |