Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LJDFIFNA_RS05180 Genome accession   NZ_LR822060
Coordinates   1009827..1010252 (-) Length   141 a.a.
NCBI ID   WP_015978401.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate P3.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1004827..1015252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJDFIFNA_RS05130 (H0509_RS05130) - 1005016..1005141 (-) 126 Protein_985 SA1788 family PVL leukocidin-associated protein -
  LJDFIFNA_RS05135 (BKMNNEJI_00979) - 1005209..1005394 (-) 186 WP_031783102.1 DUF3113 family protein -
  LJDFIFNA_RS05140 (BKMNNEJI_00980) - 1005394..1005801 (-) 408 WP_000401950.1 RusA family crossover junction endodeoxyribonuclease -
  LJDFIFNA_RS05145 (BKMNNEJI_00981) - 1005811..1006032 (-) 222 WP_001123688.1 DUF3269 family protein -
  LJDFIFNA_RS05150 (BKMNNEJI_00982) - 1006036..1006251 (-) 216 WP_001024405.1 hypothetical protein -
  LJDFIFNA_RS05155 (BKMNNEJI_00983) - 1006248..1007489 (-) 1242 WP_015445891.1 DnaB helicase C-terminal domain-containing protein -
  LJDFIFNA_RS05160 (BKMNNEJI_00984) - 1007486..1007842 (-) 357 WP_001132243.1 hypothetical protein -
  LJDFIFNA_RS05165 (BKMNNEJI_00985) - 1007842..1008597 (-) 756 WP_001037657.1 DnaD domain protein -
  LJDFIFNA_RS05170 (BKMNNEJI_00986) - 1008590..1009264 (-) 675 WP_031879467.1 putative HNHc nuclease -
  LJDFIFNA_RS05175 (BKMNNEJI_00987) - 1009265..1009816 (-) 552 WP_001004506.1 NUMOD4 domain-containing protein -
  LJDFIFNA_RS05180 (BKMNNEJI_00988) ssbA 1009827..1010252 (-) 426 WP_015978401.1 single-stranded DNA-binding protein Machinery gene
  LJDFIFNA_RS05185 (BKMNNEJI_00989) - 1010252..1010875 (-) 624 WP_000139720.1 DUF1071 domain-containing protein -
  LJDFIFNA_RS05190 (BKMNNEJI_00990) - 1010868..1011089 (-) 222 WP_001077280.1 DUF2483 family protein -
  LJDFIFNA_RS05195 (BKMNNEJI_00991) - 1011099..1011359 (-) 261 WP_000291089.1 DUF1108 family protein -
  LJDFIFNA_RS05200 (BKMNNEJI_00992) - 1011453..1011614 (-) 162 WP_031879466.1 DUF1270 family protein -
  LJDFIFNA_RS15275 (BKMNNEJI_00993) - 1011607..1011735 (-) 129 WP_001559112.1 hypothetical protein -
  LJDFIFNA_RS05210 (BKMNNEJI_00994) - 1011794..1012024 (+) 231 WP_000395457.1 hypothetical protein -
  LJDFIFNA_RS05215 (BKMNNEJI_00995) - 1011999..1012175 (-) 177 WP_001094935.1 hypothetical protein -
  LJDFIFNA_RS05220 (BKMNNEJI_00996) - 1012191..1012943 (-) 753 WP_023487064.1 phage antirepressor KilAC domain-containing protein -
  LJDFIFNA_RS05225 (BKMNNEJI_00997) - 1012945..1013130 (-) 186 WP_000933363.1 helix-turn-helix domain-containing protein -
  LJDFIFNA_RS05230 (BKMNNEJI_00998) - 1013570..1013779 (+) 210 WP_000642492.1 hypothetical protein -
  LJDFIFNA_RS05235 (BKMNNEJI_00999) - 1013769..1013912 (-) 144 WP_001648348.1 hypothetical protein -
  LJDFIFNA_RS05240 (BKMNNEJI_01000) - 1013927..1014373 (-) 447 WP_031879465.1 hypothetical protein -
  LJDFIFNA_RS05245 (BKMNNEJI_01001) - 1014391..1014615 (-) 225 WP_000333485.1 DUF739 family protein -
  LJDFIFNA_RS05250 (BKMNNEJI_01002) - 1014777..1015157 (+) 381 WP_001089477.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15947.45 Da        Isoelectric Point: 5.8790

>NTDB_id=1132235 LJDFIFNA_RS05180 WP_015978401.1 1009827..1010252(-) (ssbA) [Staphylococcus aureus isolate P3.1]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1132235 LJDFIFNA_RS05180 WP_015978401.1 1009827..1010252(-) (ssbA) [Staphylococcus aureus isolate P3.1]
ATGTTAAATAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

74.576

83.688

0.624
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.603
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

75.177

0.44
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.553

100

0.426
  ssbA Streptococcus mutans UA159

41.844

100

0.418
  ssbB/cilA Streptococcus mitis NCTC 12261

45.763

83.688

0.383
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.763

83.688

0.383
  ssbB/cilA Streptococcus pneumoniae Rx1

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae D39

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae R6

44.915

83.688

0.376
  ssbB/cilA Streptococcus mitis SK321

44.915

83.688

0.376

Multiple sequence alignment