Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | LJDFIFNA_RS02405 | Genome accession | NZ_LR822060 |
| Coordinates | 449751..450062 (+) | Length | 103 a.a. |
| NCBI ID | WP_000472256.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus isolate P3.1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 444751..455062
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJDFIFNA_RS02375 (H0509_RS02375) | - | 445534..445737 (+) | 204 | WP_000087561.1 | YqgQ family protein | - |
| LJDFIFNA_RS02380 (BKMNNEJI_00446) | - | 445734..446720 (+) | 987 | WP_000161309.1 | ROK family glucokinase | - |
| LJDFIFNA_RS02385 (BKMNNEJI_00447) | - | 446720..447049 (+) | 330 | WP_001018871.1 | MTH1187 family thiamine-binding protein | - |
| LJDFIFNA_RS02390 (BKMNNEJI_00448) | - | 447046..447669 (+) | 624 | WP_001223008.1 | MBL fold metallo-hydrolase | - |
| LJDFIFNA_RS02395 (BKMNNEJI_00449) | comGA | 447721..448695 (+) | 975 | WP_000697220.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LJDFIFNA_RS02400 (BKMNNEJI_00450) | comGB | 448667..449737 (+) | 1071 | WP_000776422.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| LJDFIFNA_RS02405 (BKMNNEJI_00451) | comGC | 449751..450062 (+) | 312 | WP_000472256.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| LJDFIFNA_RS02410 (BKMNNEJI_00452) | comGD | 450040..450486 (+) | 447 | WP_001788899.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| LJDFIFNA_RS02415 (BKMNNEJI_00453) | comGE | 450473..450772 (+) | 300 | WP_000844410.1 | hypothetical protein | Machinery gene |
| LJDFIFNA_RS02420 (BKMNNEJI_00454) | comGF | 450690..451187 (+) | 498 | WP_001788897.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| LJDFIFNA_RS02425 (H0509_RS02425) | - | 451284..451430 (+) | 147 | WP_001792109.1 | hypothetical protein | - |
| LJDFIFNA_RS02430 (BKMNNEJI_00455) | - | 451420..451944 (+) | 525 | WP_001015120.1 | shikimate kinase | - |
| LJDFIFNA_RS02435 (BKMNNEJI_00456) | gcvT | 452103..453194 (+) | 1092 | WP_000093349.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| LJDFIFNA_RS02440 (BKMNNEJI_00457) | gcvPA | 453214..454560 (+) | 1347 | WP_000019691.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 11315.36 Da Isoelectric Point: 8.5268
>NTDB_id=1132226 LJDFIFNA_RS02405 WP_000472256.1 449751..450062(+) (comGC) [Staphylococcus aureus isolate P3.1]
MFKFLKKTQAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIADGFI
KEAQKTCKSGETITISNGEAVAN
MFKFLKKTQAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIADGFI
KEAQKTCKSGETITISNGEAVAN
Nucleotide
Download Length: 312 bp
>NTDB_id=1132226 LJDFIFNA_RS02405 WP_000472256.1 449751..450062(+) (comGC) [Staphylococcus aureus isolate P3.1]
ATGTTTAAATTTCTTAAGAAAACTCAAGCGTTTACATTGATAGAGATGCTATTAGTGTTATTAATCATCAGTTTATTATT
AATTTTAATCATTCCAAATATTGCTAAACAAACTGCTCACATACAATCAACAGGTTGTAATGCACAGGTAAAAATGGTTA
ATAGTCAAATTGAAGCGTATGCATTGAAACATAATAGAAATCCATCGTCTATTGAAGACTTAATTGCAGATGGTTTTATA
AAAGAAGCACAAAAGACATGTAAATCAGGAGAGACAATAACAATTAGTAATGGAGAAGCAGTTGCAAATTAG
ATGTTTAAATTTCTTAAGAAAACTCAAGCGTTTACATTGATAGAGATGCTATTAGTGTTATTAATCATCAGTTTATTATT
AATTTTAATCATTCCAAATATTGCTAAACAAACTGCTCACATACAATCAACAGGTTGTAATGCACAGGTAAAAATGGTTA
ATAGTCAAATTGAAGCGTATGCATTGAAACATAATAGAAATCCATCGTCTATTGAAGACTTAATTGCAGATGGTTTTATA
AAAGAAGCACAAAAGACATGTAAATCAGGAGAGACAATAACAATTAGTAATGGAGAAGCAGTTGCAAATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
100 |
100 |
1 |
| comGC | Staphylococcus aureus N315 |
100 |
100 |
1 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
46.078 |
99.029 |
0.456 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
46.078 |
99.029 |
0.456 |
| comGC/cglC | Streptococcus pneumoniae D39 |
46.078 |
99.029 |
0.456 |
| comGC/cglC | Streptococcus pneumoniae R6 |
46.078 |
99.029 |
0.456 |
| comGC/cglC | Streptococcus mitis SK321 |
51.163 |
83.495 |
0.427 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
51.163 |
83.495 |
0.427 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
42.857 |
95.146 |
0.408 |
| comYC | Streptococcus suis isolate S10 |
50 |
75.728 |
0.379 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.758 |
88.35 |
0.369 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
46.341 |
79.612 |
0.369 |