Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LJDFIFNA_RS02410 Genome accession   NZ_LR822060
Coordinates   450040..450486 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate P3.1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445040..455486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJDFIFNA_RS02375 (H0509_RS02375) - 445534..445737 (+) 204 WP_000087561.1 YqgQ family protein -
  LJDFIFNA_RS02380 (BKMNNEJI_00446) - 445734..446720 (+) 987 WP_000161309.1 ROK family glucokinase -
  LJDFIFNA_RS02385 (BKMNNEJI_00447) - 446720..447049 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LJDFIFNA_RS02390 (BKMNNEJI_00448) - 447046..447669 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  LJDFIFNA_RS02395 (BKMNNEJI_00449) comGA 447721..448695 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  LJDFIFNA_RS02400 (BKMNNEJI_00450) comGB 448667..449737 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  LJDFIFNA_RS02405 (BKMNNEJI_00451) comGC 449751..450062 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  LJDFIFNA_RS02410 (BKMNNEJI_00452) comGD 450040..450486 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  LJDFIFNA_RS02415 (BKMNNEJI_00453) comGE 450473..450772 (+) 300 WP_000844410.1 hypothetical protein Machinery gene
  LJDFIFNA_RS02420 (BKMNNEJI_00454) comGF 450690..451187 (+) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  LJDFIFNA_RS02425 (H0509_RS02425) - 451284..451430 (+) 147 WP_001792109.1 hypothetical protein -
  LJDFIFNA_RS02430 (BKMNNEJI_00455) - 451420..451944 (+) 525 WP_001015120.1 shikimate kinase -
  LJDFIFNA_RS02435 (BKMNNEJI_00456) gcvT 452103..453194 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  LJDFIFNA_RS02440 (BKMNNEJI_00457) gcvPA 453214..454560 (+) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=1132227 LJDFIFNA_RS02410 WP_001788899.1 450040..450486(+) (comGD) [Staphylococcus aureus isolate P3.1]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1132227 LJDFIFNA_RS02410 WP_001788899.1 450040..450486(+) (comGD) [Staphylococcus aureus isolate P3.1]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment