Detailed information NTG1132082

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: H1W94_RS08580
• Genome accession: NZ_LR822041
• Coordinates: 1656151..1656543 (-)
• Length: 130 a.a.
• NCBI ID: WP_011227579.1
• Uniprot ID: A0A2S4DWC9
• Organism: Streptococcus thermophilus isolate STH_CIRM_1122
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1651151..1661543

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1W94_RS08550 (STHERMO_1904)	dapD	1651454..1652152 (-)	699	WP_002951996.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-
H1W94_RS10220	-	1652238..1652992 (-)	755	Protein_1622	HAD family hydrolase	-
H1W94_RS08560 (STHERMO_1907)	-	1653107..1653940 (-)	834	WP_011227577.1	putative RNA methyltransferase	-
H1W94_RS08570 (STHERMO_1908)	-	1654309..1654476 (+)	168	WP_002945733.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
H1W94_RS10225 (STHERMO_1909)	-	1654529..1654765 (+)	237	WP_041827105.1	hypothetical protein	-
H1W94_RS08575 (STHERMO_1910)	tadA	1654873..1655391 (-)	519	WP_011227578.1	tRNA adenosine(34) deaminase TadA	-
H1W94_RS08580 (STHERMO_1912)	ssbA	1656151..1656543 (-)	393	WP_011227579.1	single-stranded DNA-binding protein	Machinery gene
H1W94_RS08585 (STHERMO_1913)	-	1656748..1656975 (-)	228	WP_003095911.1	sulfurtransferase TusA family protein	-
H1W94_RS08590 (STHERMO_1914)	-	1656990..1657631 (-)	642	Protein_1629	YeeE/YedE family protein	-
H1W94_RS08595 (STHERMO_1915)	-	1657653..1658606 (-)	954	WP_041826943.1	IS30 family transposase	-
H1W94_RS08600 (STHERMO_1916)	-	1658865..1659266 (-)	402	Protein_1631	YeeE/YedE family protein	-
H1W94_RS08605 (STHERMO_1917)	ytpR	1659404..1660027 (-)	624	WP_002952017.1	YtpR family tRNA-binding protein	-
H1W94_RS08610 (STHERMO_1918)	-	1660037..1660351 (-)	315	WP_011226613.1	thioredoxin family protein	-
H1W94_RS08615 (STHERMO_1919)	-	1660348..1660632 (-)	285	WP_041827106.1	DUF4651 domain-containing protein	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14773.70 Da
• Isoelectric Point: 5.9275

>NTDB_id=1132082 H1W94_RS08580 WP_011227579.1 1656151..1656543(-) (ssbA) [Streptococcus thermophilus isolate STH_CIRM_1122]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGELRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=1132082 H1W94_RS08580 WP_011227579.1 1656151..1656543(-) (ssbA) [Streptococcus thermophilus isolate STH_CIRM_1122]
ATGTATAACAAAGTAATTTTAATTGGACGTTTAACAGCTACTCCTGAAATGGTTAAGACTGCTAGCGATAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGACTTTATTACAGTGGTTGTCT
GGGGGCGTTTGGCTGAGACCTTAGCCTCTTATGCTAGCAAGGGGAGTTTAATTTCTCTTGATGGTGAGCTTCGTACCCGT
AAGTACGATAAGGATGGCCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

3D structure

• AlphaFold DB: A0A2S4DWC9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	80.153	100	0.808
ssbB/cilA	Streptococcus pneumoniae TIGR4	75.573	100	0.762
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.762
ssbB/cilA	Streptococcus mitis SK321	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae R6	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae Rx1	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae D39	74.809	100	0.754
ssbB/cilA	Streptococcus mitis NCTC 12261	73.282	100	0.738
ssbB	Lactococcus lactis subsp. cremoris KW2	61.607	86.154	0.531
ssbA	Bacillus subtilis subsp. subtilis str. 168	48.113	81.538	0.392
ssb	Latilactobacillus sakei subsp. sakei 23K	47.17	81.538	0.385