Detailed information NTG1132020

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: H1W80_RS08360
• Genome accession: NZ_LR822040
• Coordinates: 1621677..1622069 (-)
• Length: 130 a.a.
• NCBI ID: WP_180473347.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_1125
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1616677..1627069

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1W80_RS08330 (STHERMO_1879)	dapD	1616975..1617673 (-)	699	WP_002951996.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-
H1W80_RS08335	-	1617759..1618513 (-)	755	Protein_1585	HAD family hydrolase	-
H1W80_RS08340 (STHERMO_1883)	-	1618632..1619465 (-)	834	WP_024010090.1	putative RNA methyltransferase	-
H1W80_RS08350 (STHERMO_1884)	-	1619834..1620001 (+)	168	WP_164178320.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
H1W80_RS09950 (STHERMO_1885)	-	1620054..1620317 (+)	264	WP_011681674.1	hypothetical protein	-
H1W80_RS08355 (STHERMO_1886)	tadA	1620398..1620916 (-)	519	WP_011681675.1	tRNA adenosine(34) deaminase TadA	-
H1W80_RS08360 (STHERMO_1888)	ssbA	1621677..1622069 (-)	393	WP_180473347.1	single-stranded DNA-binding protein	Machinery gene
H1W80_RS08365 (STHERMO_1889)	-	1622274..1622501 (-)	228	WP_011226611.1	sulfurtransferase TusA family protein	-
H1W80_RS08370 (STHERMO_1890)	-	1622516..1623547 (-)	1032	WP_180473348.1	YeeE/YedE family protein	-
H1W80_RS08375 (STHERMO_1891)	ytpR	1623685..1624308 (-)	624	WP_002952017.1	YtpR family tRNA-binding protein	-
H1W80_RS08380 (STHERMO_1892)	-	1624318..1624632 (-)	315	WP_002945230.1	thioredoxin family protein	-
H1W80_RS08385 (STHERMO_1893)	-	1624629..1624913 (-)	285	WP_180473349.1	DUF4651 domain-containing protein	-
H1W80_RS08390 (STHERMO_1894)	pepA	1625013..1626080 (+)	1068	WP_180473350.1	glutamyl aminopeptidase	-
H1W80_RS08395 (STHERMO_1895)	proC	1626096..1626866 (+)	771	WP_011226616.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14759.67 Da
• Isoelectric Point: 5.9220

>NTDB_id=1132020 H1W80_RS08360 WP_180473347.1 1621677..1622069(-) (ssbA) [Streptococcus thermophilus isolate STH_CIRM_1125]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLADTLASYASKGSLISLDGEIRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=1132020 H1W80_RS08360 WP_180473347.1 1621677..1622069(-) (ssbA) [Streptococcus thermophilus isolate STH_CIRM_1125]
ATGTATAACAAAGTAATTTTAATTGGACGTTTGACAGCAACACCTGAAATGGTTAAGACTGCTAGTGACAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGATTTTATCACAGTAGTGGTTT
GGGGCCGTTTAGCTGATACATTGGCATCTTATGCTAGCAAGGGAAGTTTAATTTCTCTTGATGGTGAGATTCGCACTCGT
AAGTATGATAAGGATGGTCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	78.626	100	0.792
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.762
ssbB/cilA	Streptococcus pneumoniae TIGR4	74.046	100	0.746
ssbB/cilA	Streptococcus mitis SK321	73.282	100	0.738
ssbB/cilA	Streptococcus pneumoniae R6	73.282	100	0.738
ssbB/cilA	Streptococcus pneumoniae Rx1	73.282	100	0.738
ssbB/cilA	Streptococcus pneumoniae D39	73.282	100	0.738
ssbB/cilA	Streptococcus mitis NCTC 12261	71.756	100	0.723
ssbB	Lactococcus lactis subsp. cremoris KW2	61.607	86.154	0.531
ssbA	Bacillus subtilis subsp. subtilis str. 168	46.226	81.538	0.377
ssb	Latilactobacillus sakei subsp. sakei 23K	45.283	81.538	0.369