Detailed information NTG1131904

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: H1W87_RS08510
• Genome accession: NZ_LR822037
• Coordinates: 1640511..1640903 (-)
• Length: 130 a.a.
• NCBI ID: WP_011227579.1
• Uniprot ID: A0A2S4DWC9
• Organism: Streptococcus thermophilus isolate STH_CIRM_1121
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1635511..1645903

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1W87_RS08480 (STHERMO_1910)	dapD	1635814..1636512 (-)	699	WP_002951996.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-
H1W87_RS08485	-	1636598..1637352 (-)	755	Protein_1619	HAD family hydrolase	-
H1W87_RS08490 (STHERMO_1914)	-	1637467..1638300 (-)	834	WP_180478274.1	putative RNA methyltransferase	-
H1W87_RS08500 (STHERMO_1915)	-	1638669..1638836 (+)	168	WP_002945733.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
H1W87_RS10095 (STHERMO_1916)	-	1638889..1639152 (+)	264	WP_011681674.1	hypothetical protein	-
H1W87_RS08505 (STHERMO_1917)	tadA	1639233..1639751 (-)	519	WP_011227578.1	tRNA adenosine(34) deaminase TadA	-
H1W87_RS08510 (STHERMO_1919)	ssbA	1640511..1640903 (-)	393	WP_011227579.1	single-stranded DNA-binding protein	Machinery gene
H1W87_RS08515 (STHERMO_1920)	-	1641108..1641335 (-)	228	WP_003095911.1	sulfurtransferase TusA family protein	-
H1W87_RS08520 (STHERMO_1921)	-	1641350..1642381 (-)	1032	WP_116920363.1	YeeE/YedE family protein	-
H1W87_RS08525 (STHERMO_1922)	ytpR	1642516..1643139 (-)	624	WP_002952017.1	YtpR family tRNA-binding protein	-
H1W87_RS08530 (STHERMO_1923)	-	1643149..1643463 (-)	315	WP_180478276.1	thioredoxin family protein	-
H1W87_RS08535 (STHERMO_1924)	-	1643460..1643744 (-)	285	WP_002952020.1	DUF4651 domain-containing protein	-
H1W87_RS08540 (STHERMO_1925)	pepA	1643844..1644911 (+)	1068	WP_002952022.1	glutamyl aminopeptidase	-
H1W87_RS08545 (STHERMO_1926)	proC	1644927..1645697 (+)	771	WP_180478278.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14773.70 Da
• Isoelectric Point: 5.9275

>NTDB_id=1131904 H1W87_RS08510 WP_011227579.1 1640511..1640903(-) (ssbA) [Streptococcus thermophilus isolate STH_CIRM_1121]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGELRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=1131904 H1W87_RS08510 WP_011227579.1 1640511..1640903(-) (ssbA) [Streptococcus thermophilus isolate STH_CIRM_1121]
ATGTATAACAAAGTAATTTTAATTGGACGTTTAACAGCTACTCCTGAAATGGTTAAGACTGCTAGCGATAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGACTTTATTACGGTGGTTGTCT
GGGGGCGTTTGGCTGAGACCTTAGCCTCTTATGCTAGCAAGGGGAGTTTAATTTCTCTTGATGGTGAGCTTCGTACCCGT
AAGTACGATAAGGATGGCCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

3D structure

• AlphaFold DB: A0A2S4DWC9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	80.153	100	0.808
ssbB/cilA	Streptococcus pneumoniae TIGR4	75.573	100	0.762
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.762
ssbB/cilA	Streptococcus mitis SK321	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae R6	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae Rx1	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae D39	74.809	100	0.754
ssbB/cilA	Streptococcus mitis NCTC 12261	73.282	100	0.738
ssbB	Lactococcus lactis subsp. cremoris KW2	61.607	86.154	0.531
ssbA	Bacillus subtilis subsp. subtilis str. 168	48.113	81.538	0.392
ssb	Latilactobacillus sakei subsp. sakei 23K	47.17	81.538	0.385