Detailed information NTG1131303

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: H1W98_RS09575
• Genome accession: NZ_LR822026
• Coordinates: 1866081..1866473 (-)
• Length: 130 a.a.
• NCBI ID: WP_011227579.1
• Uniprot ID: A0A2S4DWC9
• Organism: Streptococcus thermophilus isolate STH_CIRM_967
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1861081..1871473

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1W98_RS09545 (STHERMO_2184)	dapD	1861382..1862080 (-)	699	WP_084829131.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-
H1W98_RS09550 (STHERMO_2185)	-	1862166..1862918 (-)	753	WP_180482291.1	HAD family hydrolase	-
H1W98_RS09555 (STHERMO_2186)	-	1863033..1863866 (-)	834	WP_180482292.1	putative RNA methyltransferase	-
H1W98_RS09565 (STHERMO_2187)	-	1864235..1864402 (+)	168	WP_179972330.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
H1W98_RS11270 (STHERMO_2188)	-	1864455..1864718 (+)	264	WP_332057735.1	hypothetical protein	-
H1W98_RS09570 (STHERMO_2189)	tadA	1864800..1865318 (-)	519	WP_179972331.1	tRNA adenosine(34) deaminase TadA	-
H1W98_RS09575 (STHERMO_2190)	ssbA	1866081..1866473 (-)	393	WP_011227579.1	single-stranded DNA-binding protein	Machinery gene
H1W98_RS09580 (STHERMO_2191)	-	1866678..1866905 (-)	228	WP_064355726.1	sulfurtransferase TusA family protein	-
H1W98_RS09585 (STHERMO_2192)	-	1866920..1867951 (-)	1032	WP_179972334.1	YeeE/YedE family protein	-
H1W98_RS09590 (STHERMO_2193)	ytpR	1868089..1868712 (-)	624	WP_179972335.1	YtpR family tRNA-binding protein	-
H1W98_RS09595 (STHERMO_2194)	-	1868722..1869036 (-)	315	WP_002945230.1	thioredoxin family protein	-
H1W98_RS09600 (STHERMO_2195)	-	1869033..1869317 (-)	285	WP_002952020.1	DUF4651 domain-containing protein	-
H1W98_RS09605 (STHERMO_2196)	pepA	1869417..1870484 (+)	1068	WP_180482293.1	glutamyl aminopeptidase	-
H1W98_RS09610 (STHERMO_2197)	proC	1870500..1871270 (+)	771	WP_179972337.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14773.70 Da
• Isoelectric Point: 5.9275

>NTDB_id=1131303 H1W98_RS09575 WP_011227579.1 1866081..1866473(-) (ssbA) [Streptococcus thermophilus isolate STH_CIRM_967]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGELRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=1131303 H1W98_RS09575 WP_011227579.1 1866081..1866473(-) (ssbA) [Streptococcus thermophilus isolate STH_CIRM_967]
ATGTATAACAAAGTAATTTTAATTGGACGTTTAACAGCTACTCCTGAAATGGTTAAGACTGCTAGCGATAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGACTTTATTACAGTGGTTGTCT
GGGGGCGTTTGGCTGAGACCTTAGCCTCTTATGCTAGCAAGGGGAGTTTAATTTCTCTTGATGGTGAGCTTCGTACCCGT
AAGTACGATAAGGATGGCCAAACCCATTACGTTACTGAGGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGATAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

3D structure

• AlphaFold DB: A0A2S4DWC9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	80.153	100	0.808
ssbB/cilA	Streptococcus pneumoniae TIGR4	75.573	100	0.762
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.762
ssbB/cilA	Streptococcus mitis SK321	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae R6	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae Rx1	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae D39	74.809	100	0.754
ssbB/cilA	Streptococcus mitis NCTC 12261	73.282	100	0.738
ssbB	Lactococcus lactis subsp. cremoris KW2	61.607	86.154	0.531
ssbA	Bacillus subtilis subsp. subtilis str. 168	48.113	81.538	0.392
ssb	Latilactobacillus sakei subsp. sakei 23K	47.17	81.538	0.385